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Bromine in PDB 8por: Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD6-Amp Adduct

Enzymatic activity of Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD6-Amp Adduct

All present enzymatic activity of Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD6-Amp Adduct:
6.1.1.4;

Protein crystallography data

The structure of Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD6-Amp Adduct, PDB code: 8por was solved by A.Palencia, M.Lukarska, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.19 / 1.85
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 126.63, 126.63, 61.59, 90, 90, 120
R / Rfree (%) 14.7 / 16.6

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD6-Amp Adduct (pdb code 8por). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD6-Amp Adduct, PDB code: 8por:

Bromine binding site 1 out of 1 in 8por

Go back to Bromine Binding Sites List in 8por
Bromine binding site 1 out of 1 in the Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD6-Amp Adduct


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Wolbachia Leucyl-Trna Synthetase Editing Domain Bound to CMPD6-Amp Adduct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br402

b:29.4
occ:1.00
 BR A:EYT402 0.0 29.4 1.0
C13 A:EYT402 1.9 25.9 1.0
C14 A:EYT402 2.8 24.5 1.0
C11 A:EYT402 2.9 24.2 1.0
C10 A:EYT402 3.3 23.7 1.0
C17 A:EYT402 3.5 24.6 1.0
OG1 A:THR246 3.6 25.4 1.0
CB A:CYS324 3.7 26.3 1.0
O A:HIS327 3.8 26.0 1.0
CB A:HIS327 3.9 26.1 1.0
C A:HIS327 4.0 24.9 1.0
CB A:CSS243 4.0 30.2 1.0
SG A:CYS324 4.1 27.3 1.0
CB A:ASP328 4.1 22.6 1.0
CG2 A:THR246 4.2 30.0 1.0
O A:HOH621 4.2 41.8 1.0
C15 A:EYT402 4.2 24.1 1.0
C12 A:EYT402 4.2 23.5 1.0
CB A:THR246 4.2 25.7 1.0
SG A:CSS243 4.3 36.7 1.0
N A:ASP328 4.4 23.4 1.0
N18 A:EYT402 4.5 25.6 1.0
O A:CYS324 4.5 26.9 1.0
CA A:HIS327 4.5 24.1 1.0
CA A:ASP328 4.7 23.1 1.0
O A:HOH506 4.7 43.1 1.0
O1 A:EYT402 4.7 23.2 1.0
C16 A:EYT402 4.7 24.4 1.0
OD2 A:ASP328 4.8 22.8 1.0
CA A:CYS324 5.0 24.5 1.0
CG A:ASP328 5.0 22.8 1.0

Reference:

A.Palencia, G.Hoffmann, M.Lukarska, R.Clare, S.Ward, M.A.Taylor, M.Ringkjobing Jensen. Targeting A Microbiota Wolbachian Aminoacyl-Trna Synthetase to Block Its Pathogenic Host Science Advances 2024.
Page generated: Thu Jul 11 05:28:19 2024

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