Atomistry » Bromine » PDB 8r0w-8vtm » 8rdc
Atomistry »
  Bromine »
    PDB 8r0w-8vtm »
      8rdc »

Bromine in PDB 8rdc: Galectin-1 in Complex with Thiogalactoside Derivative

Protein crystallography data

The structure of Galectin-1 in Complex with Thiogalactoside Derivative, PDB code: 8rdc was solved by M.Hakansson, C.Diehl, K.Peterson, F.Zetterberg, U.Nilsson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.82 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.995, 70.035, 99.508, 90, 90, 90
R / Rfree (%) 17.2 / 20

Other elements in 8rdc:

The structure of Galectin-1 in Complex with Thiogalactoside Derivative also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Galectin-1 in Complex with Thiogalactoside Derivative (pdb code 8rdc). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Galectin-1 in Complex with Thiogalactoside Derivative, PDB code: 8rdc:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 8rdc

Go back to Bromine Binding Sites List in 8rdc
Bromine binding site 1 out of 2 in the Galectin-1 in Complex with Thiogalactoside Derivative


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Galectin-1 in Complex with Thiogalactoside Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br601

b:28.5
occ:1.00
BR28 A:YNO601 0.0 28.5 1.0
C26 A:YNO601 1.9 26.6 1.0
C25 A:YNO601 2.8 27.7 1.0
C27 A:YNO601 2.8 25.3 1.0
O A:GLY69 3.2 24.1 1.0
O A:HOH767 3.5 41.9 1.0
ND2 A:ASN61 3.6 22.3 1.0
CB A:TRP68 3.8 24.6 1.0
O A:HOH806 3.9 48.6 1.0
O A:HOH775 3.9 28.8 1.0
O1 A:YNO601 4.0 22.8 1.0
CG A:GLU71 4.1 24.5 1.0
N24 A:YNO601 4.1 28.0 1.0
C22 A:YNO601 4.1 25.9 1.0
OE2 A:GLU71 4.3 26.5 1.0
CD A:GLU71 4.4 26.9 1.0
C A:GLY69 4.4 23.2 1.0
C23 A:YNO601 4.6 27.5 1.0
CG A:TRP68 4.6 25.1 1.0
O A:HOH753 4.7 46.4 1.0
N A:GLU71 4.8 23.5 1.0
O A:TRP68 4.8 25.2 1.0
C A:TRP68 4.8 25.3 1.0
CG A:ASN61 4.9 22.2 1.0
CA A:TRP68 5.0 24.8 1.0
CD1 A:TRP68 5.0 26.0 1.0

Bromine binding site 2 out of 2 in 8rdc

Go back to Bromine Binding Sites List in 8rdc
Bromine binding site 2 out of 2 in the Galectin-1 in Complex with Thiogalactoside Derivative


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Galectin-1 in Complex with Thiogalactoside Derivative within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br601

b:34.5
occ:1.00
BR28 B:YNO601 0.0 34.5 1.0
C26 B:YNO601 1.9 30.6 1.0
C27 B:YNO601 2.8 28.4 1.0
C25 B:YNO601 2.9 29.9 1.0
O B:GLY69 3.4 28.4 1.0
O B:HOH757 3.7 52.8 1.0
ND2 B:ASN61 3.8 25.8 1.0
CB B:TRP68 3.9 26.6 1.0
O B:HOH751 3.9 35.0 1.0
O1 B:YNO601 4.1 27.3 1.0
CG B:GLU71 4.1 30.8 1.0
N24 B:YNO601 4.1 29.5 1.0
C22 B:YNO601 4.1 27.9 1.0
OE2 B:GLU71 4.3 31.0 1.0
CD B:GLU71 4.3 31.4 1.0
C23 B:YNO601 4.6 28.6 1.0
C B:GLY69 4.6 27.5 1.0
O B:TRP68 4.7 27.6 1.0
CG B:TRP68 4.7 27.0 1.0
C B:TRP68 4.7 27.4 1.0
CA B:TRP68 5.0 26.7 1.0
N B:GLU71 5.0 30.2 1.0

Reference:

M.Hakansson, C.Diehl, K.Petersn, U.Nilsson. Galectin-1 in Complex with Thiogalactoside Derivative To Be Published.
Page generated: Sat Feb 8 15:21:12 2025

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy