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Bromine in PDB 9g4r: Crystal Structure of the DUF2693-Fd Rna Motif

Protein crystallography data

The structure of Crystal Structure of the DUF2693-Fd Rna Motif, PDB code: 9g4r was solved by L.Huang, D.M.J.Lilley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.96 / 2.53
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 110.761, 110.761, 74.784, 90, 90, 120
R / Rfree (%) 18.5 / 21.6

Other elements in 9g4r:

The structure of Crystal Structure of the DUF2693-Fd Rna Motif also contains other interesting chemical elements:

Sodium (Na) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of the DUF2693-Fd Rna Motif (pdb code 9g4r). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of the DUF2693-Fd Rna Motif, PDB code: 9g4r:

Bromine binding site 1 out of 1 in 9g4r

Go back to Bromine Binding Sites List in 9g4r
Bromine binding site 1 out of 1 in the Crystal Structure of the DUF2693-Fd Rna Motif


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the DUF2693-Fd Rna Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br3

b:114.8
occ:1.00
BR A:CBV3 0.0 114.8 1.0
C5 A:CBV3 1.9 90.0 1.0
HN42 A:CBV3 2.7 96.9 1.0
C6 A:CBV3 2.8 82.9 1.0
C4 A:CBV3 2.9 73.4 1.0
H6 A:CBV3 3.0 99.5 1.0
N4 A:CBV3 3.2 80.8 1.0
C4 A:C2 3.3 69.2 1.0
C5 A:C2 3.4 72.7 1.0
N3 A:C2 3.5 68.4 1.0
C6 A:C2 3.5 73.5 1.0
C2 A:C2 3.7 72.0 1.0
N1 A:C2 3.7 77.0 1.0
N4 A:C2 3.9 68.8 1.0
O2P A:CBV3 3.9 77.0 1.0
N1 A:CBV3 4.1 69.3 1.0
C3' A:C2 4.1 73.2 1.0
N3 A:CBV3 4.2 67.7 1.0
HN41 A:CBV3 4.2 96.9 1.0
O2 A:C2 4.4 71.2 1.0
C2' A:C2 4.5 73.7 1.0
C2 A:CBV3 4.6 65.9 1.0
C1' A:C2 4.6 72.9 1.0
O5' A:CBV3 4.7 93.0 1.0
P A:CBV3 4.8 84.1 1.0
C5' A:C2 4.8 78.9 1.0
C4' A:C2 4.9 76.8 1.0
O3' A:C2 5.0 72.4 1.0

Reference:

L.Huang, D.M.J.Lilley. Structural Basis For Trna-Mimicking By DUF2693-Fd Rna Motif To Be Published.
Page generated: Mon Aug 4 17:38:45 2025

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