Bromine in PDB 9ime: Pilin Pila From Burkholderia Thailandensis with Bromide Ions

The structure of Pilin Pila From Burkholderia Thailandensis with Bromide Ions, PDB code: 9ime was solved by T.Lotangchanintra, Z.Wawrzak, K.Wangkanont, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.80 / 1.35
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	32.245, 52.72, 72.885, 90, 97.6, 90
R / Rfree (%)	15.5 / 18.8

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Bromine atom in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions (pdb code 9ime). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 13 binding sites of Bromine where determined in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions, PDB code: 9ime:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Br211 b:21.6 occ:0.28 NE A:ARG44 3.2 15.0 1.0 NH2 A:ARG44 3.3 22.4 1.0 CB B:SER42 3.6 11.9 0.7 OG B:SER42 3.7 9.8 0.3 CZ A:ARG44 3.7 20.3 1.0 CB B:SER42 3.7 9.7 0.3 CD1 B:LEU45 3.7 17.7 1.0 O B:HOH349 3.8 22.6 1.0 CA B:SER42 3.8 10.1 0.7 CA B:SER42 3.8 9.4 0.3 O A:HOH451 4.0 23.6 1.0 CB A:ALA41 4.1 10.3 1.0 CD A:ARG44 4.3 13.2 1.0 CA A:ALA41 4.5 8.9 1.0 O A:HOH470 4.5 28.2 1.0 O A:HOH454 4.5 35.1 1.0 N B:SER42 4.7 9.2 0.7 N B:SER42 4.7 9.1 0.3 O B:SER42 4.8 9.6 0.3 CB A:ARG44 4.8 8.7 1.0 O B:SER42 4.8 10.3 0.7 C B:SER42 4.8 9.2 0.3 C B:SER42 4.8 9.4 0.7 CB B:LEU45 4.9 11.9 1.0 OG B:SER42 4.9 13.3 0.7 CG B:LEU45 4.9 15.8 1.0

Bromine binding site 2 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Br212 b:20.7 occ:0.33 O A:HOH338 2.9 27.8 1.0 O A:HOH411 3.1 16.1 1.0 N A:ILE127 3.5 14.4 1.0 CB A:ALA48 3.9 10.5 1.0 CB A:ILE127 3.9 11.9 1.0 OE2 B:GLU49 4.1 28.0 0.5 O B:HOH372 4.2 35.6 1.0 CG1 A:ILE127 4.2 13.8 1.0 O A:HOH451 4.2 23.6 1.0 CA A:ILE127 4.3 12.2 1.0 CD2 B:LEU45 4.3 17.0 1.0 CA A:THR126 4.3 21.3 1.0 CD1 A:ILE127 4.3 14.9 1.0 O A:ILE127 4.4 15.4 1.0 C A:THR126 4.4 17.8 1.0 O A:GLY125 4.5 21.4 1.0 C A:ILE127 4.8 11.4 1.0 CG2 A:THR126 4.9 28.5 1.0 C3 A:GOL204 4.9 36.1 0.8 CD B:GLU49 5.0 26.8 0.5

Bromine binding site 3 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Br213 b:26.1 occ:0.38 O A:HOH502 3.0 51.9 1.0 O A:HOH489 3.5 45.4 1.0 CB A:ARG30 3.9 13.7 1.0 CA A:PRO162 4.0 18.6 1.0 CG A:ARG30 4.0 16.6 1.0 CD A:ARG30 4.0 17.4 1.0 CD A:PRO163 4.2 21.6 1.0 NH2 A:ARG166 4.6 21.3 1.0 CB A:PRO162 4.6 20.4 1.0 N A:PRO162 4.6 17.6 1.0 O A:ALA161 4.7 16.7 1.0 CG A:PRO162 4.8 20.5 1.0 C A:ALA161 4.9 17.1 1.0 NE A:ARG30 5.0 17.1 1.0 CA A:ARG30 5.0 13.2 1.0

Bromine binding site 4 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Br214 b:11.4 occ:0.42 O A:HOH373 3.1 21.7 1.0 N A:ILE75 3.3 8.8 1.0 O A:HOH385 3.4 29.6 1.0 O A:ILE75 3.8 9.7 1.0 CA A:ARG74 3.8 9.5 1.0 CB A:ARG74 4.0 12.8 1.0 CB A:SER58 4.0 11.4 1.0 CD2 A:TYR61 4.0 11.4 1.0 C A:ARG74 4.1 9.4 1.0 CA A:ILE75 4.2 8.1 1.0 CB A:ILE75 4.2 8.5 1.0 C A:ILE75 4.4 9.2 1.0 O A:HOH396 4.6 33.5 1.0 O A:HOH391 4.7 30.7 1.0 CE2 A:TYR61 4.7 11.5 1.0 CG1 A:ILE75 4.7 8.5 1.0 OG A:SER58 4.7 14.3 1.0 O A:ILE73 4.8 12.1 1.0

Bromine binding site 5 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Br215 b:33.7 occ:0.36 OG1 A:THR67 3.0 20.8 1.0 CD1 A:LEU39 3.6 20.1 1.0 NH2 B:ARG68 3.6 43.8 1.0 CB A:THR67 3.7 22.4 1.0 CG2 A:THR67 3.8 22.2 1.0 NH1 B:ARG68 3.9 43.2 1.0 CG2 A:VAL70 3.9 16.7 1.0 OE2 A:GLU35 3.9 39.1 1.0 CB A:GLU35 4.1 22.4 1.0 CB A:ASN69 4.1 18.4 1.0 ND2 A:ASN69 4.2 22.7 1.0 CZ B:ARG68 4.2 42.5 1.0 CD A:GLU35 4.6 36.0 1.0 CG A:ASN69 4.7 20.9 1.0 CB A:VAL70 4.7 15.9 1.0 N A:VAL70 4.7 14.3 1.0 CG A:LEU39 4.8 17.7 1.0 N A:ASN69 4.8 17.7 1.0 C A:GLU35 4.9 14.1 1.0 CA A:ASN69 4.9 16.5 1.0 OE2 B:GLU35 4.9 23.4 0.6 CG A:GLU35 5.0 29.5 1.0 N A:GLY36 5.0 12.8 1.0

Bromine binding site 6 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Br216 b:48.2 occ:0.37 O A:HOH500 3.1 54.5 1.0 N A:PRO144 3.8 14.6 1.0 CD A:PRO144 3.8 14.8 1.0 C A:ALA143 3.9 14.2 1.0 CD A:PRO111 3.9 26.8 1.0 O A:ALA143 3.9 15.8 1.0 CB A:ALA143 4.0 15.9 1.0 CB A:PRO144 4.2 15.1 1.0 CG A:PRO111 4.2 26.9 1.0 CA A:PRO144 4.3 15.1 1.0 O A:PRO111 4.4 27.1 1.0 CG A:PRO144 4.4 15.3 1.0 O A:HOH398 4.5 41.6 1.0 CA A:ALA143 4.6 13.1 1.0 N A:PRO111 4.8 24.1 1.0 O A:HOH401 4.8 40.4 1.0 O A:HOH497 4.9 34.4 1.0

Bromine binding site 7 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Br217 b:30.0 occ:0.33 N A:ALA137 3.1 14.5 1.0 O A:HOH384 3.3 22.7 1.0 O A:HOH484 3.3 37.9 1.0 N A:SER138 3.7 12.4 1.0 OG A:SER138 3.8 19.2 1.0 CB A:ALA137 3.8 18.3 1.0 CA A:ALA137 3.8 15.9 1.0 CB A:ALA167 3.9 27.9 1.0 CA A:ALA167 4.0 27.2 1.0 C A:ALA137 4.1 14.5 1.0 O A:ALA167 4.1 30.5 1.0 C A:LYS136 4.1 14.6 1.0 CA A:LYS136 4.3 13.6 1.0 O A:ASP135 4.5 19.6 1.0 C A:ALA167 4.5 29.4 1.0 O A:SER138 4.6 12.4 1.0 CB A:SER138 4.6 17.3 1.0 CA A:SER138 4.7 12.5 1.0 CG A:LYS136 4.7 12.7 1.0 O A:HOH416 4.9 30.8 1.0

Bromine binding site 8 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ B:Br205 b:25.0 occ:0.31 OG1 B:THR67 2.9 27.5 1.0 OE2 B:GLU35 3.0 23.4 0.6 CB B:THR67 3.5 26.5 1.0 CG2 B:THR67 3.7 28.0 1.0 CB B:GLU35 3.8 18.5 0.4 CB B:GLU35 3.8 18.2 0.6 CD1 B:LEU39 3.9 20.0 1.0 CD B:GLU35 4.1 23.7 0.6 CB B:ASN69 4.1 21.0 1.0 ND2 B:ASN69 4.1 25.2 1.0 CG2 B:VAL70 4.1 20.2 1.0 CG B:GLU35 4.5 21.0 0.6 CG B:GLU35 4.6 20.9 0.4 CG B:ASN69 4.6 22.7 1.0 CD2 A:LEU39 4.7 19.1 1.0 CG B:LEU39 4.7 17.4 1.0 N B:ASN69 4.8 19.1 1.0 C B:GLU35 4.8 14.4 0.4 C B:GLU35 4.8 13.9 0.6 CB B:VAL70 4.9 18.7 1.0 N B:VAL70 4.9 15.6 1.0 CA B:GLU35 4.9 15.6 0.4 CA B:GLU35 4.9 15.1 0.6 CA B:ASN69 4.9 17.8 1.0 O B:GLU35 5.0 14.5 0.4

Bromine binding site 9 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ B:Br206 b:16.6 occ:0.53 N B:ILE75 3.3 11.2 1.0 O B:HOH373 3.6 30.3 1.0 CD2 B:TYR61 3.7 17.1 0.5 CA B:ARG74 3.8 13.2 1.0 O B:HOH308 3.9 38.9 1.0 O B:ILE75 3.9 14.2 1.0 CD1 B:TYR61 3.9 14.0 0.5 CE2 B:TYR61 4.0 18.1 0.5 CD B:ARG74 4.0 33.0 1.0 CE1 B:TYR61 4.0 15.0 0.5 C B:ARG74 4.1 12.2 1.0 CB B:ARG74 4.2 18.7 1.0 CA B:ILE75 4.3 11.0 1.0 CB B:ILE75 4.3 11.1 1.0 CB B:SER58 4.4 17.7 1.0 OG B:SER63 4.5 26.0 0.5 C B:ILE75 4.5 12.0 1.0 O B:ILE73 4.7 15.5 1.0 CG1 B:ILE75 4.7 11.7 1.0 CG B:ARG74 4.8 25.9 1.0 O B:TYR61 4.9 17.3 0.5 CG B:TYR61 4.9 15.5 0.5 NH2 B:ARG74 5.0 41.3 1.0

Bromine binding site 10 out of 13 in the Pilin Pila From Burkholderia Thailandensis with Bromide Ions


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Pilin Pila From Burkholderia Thailandensis with Bromide Ions within 5.0Å range: probe atom residue distance (Å) B Occ B:Br207 b:23.9 occ:0.44 O B:HOH449 3.3 44.1 1.0 CB B:ALA157 4.0 17.7 1.0 CE B:LYS159 4.3 30.2 1.0 NZ B:LYS159 4.5 33.0 1.0

T.Lotangchanintra, Z.Wawrzak, K.Wangkanont. Pilin Pila From Burkholderia Thailandensis with Bromide Ions To Be Published.