Bromine in PDB 2r21: Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn)

The structure of Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn), PDB code: 2r21 was solved by Y.Timsit, S.Bombard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.59
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	25.250, 25.650, 29.720, 98.13, 106.15, 100.83
R / Rfree (%)	16.9 / 19.1

The structure of Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn) also contains other interesting chemical elements:

Manganese	(Mn)	1 atom
Sodium	(Na)	4 atoms

The binding sites of Bromine atom in the Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn) (pdb code 2r21). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn), PDB code: 2r21:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn) within 5.0Å range: probe atom residue distance (Å) B Occ A:Br6 b:17.3 occ:1.00 BR A:5BU6 0.0 17.3 1.0 C5 A:5BU6 1.7 11.6 1.0 C6 A:5BU6 2.6 10.6 1.0 C4 A:5BU6 2.7 11.3 1.0 O4 A:5BU6 3.0 11.7 1.0 O A:HOH38 3.6 18.8 1.0 C5 A:U5 3.6 9.5 1.0 C4 A:U5 3.6 8.5 1.0 OP2 A:5BU6 3.6 11.4 1.0 O A:HOH31 3.7 15.4 1.0 N3 A:U5 3.7 9.3 1.0 C6 A:U5 3.7 9.0 1.0 O A:HOH20 3.8 15.6 1.0 N1 A:U5 3.8 8.8 1.0 C2 A:U5 3.8 8.6 1.0 O A:HOH46 3.9 19.0 1.0 N3 A:5BU6 3.9 11.4 1.0 N1 A:5BU6 3.9 10.8 1.0 O A:HOH55 4.1 24.7 1.0 O A:HOH51 4.2 20.3 1.0 C3' A:U5 4.2 11.4 1.0 O4 A:U5 4.2 10.3 1.0 C2' A:U5 4.2 10.1 1.0 O5' A:5BU6 4.4 11.3 1.0 NA A:NA15 4.4 18.2 1.0 O2 A:U5 4.4 10.4 1.0 C2 A:5BU6 4.5 9.7 1.0 N7 A:G7 4.5 11.8 1.0 P A:5BU6 4.6 12.3 1.0 C1' A:U5 4.6 10.5 1.0 O3' A:U5 4.9 11.4 1.0

Bromine binding site 2 out of 2 in the Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structure of the Rna Brominated Tridecamer R(Gcguu- 5BUGAAACGC) at 1.6 A (Brmn) within 5.0Å range: probe atom residue distance (Å) B Occ B:Br19 b:16.5 occ:1.00 BR B:5BU19 0.0 16.5 1.0 C5 B:5BU19 1.7 9.6 1.0 C6 B:5BU19 2.6 9.3 1.0 C4 B:5BU19 2.7 9.6 1.0 O4 B:5BU19 3.0 9.9 1.0 O B:HOH86 3.4 28.9 1.0 C4 B:U18 3.6 8.6 1.0 C5 B:U18 3.6 9.1 1.0 N3 B:U18 3.6 7.5 1.0 C6 B:U18 3.7 8.7 1.0 OP2 B:5BU19 3.7 10.6 1.0 O B:HOH81 3.8 20.8 0.8 C2 B:U18 3.8 8.2 1.0 N1 B:U18 3.8 7.6 1.0 O B:HOH36 3.9 19.3 1.0 N3 B:5BU19 3.9 7.8 1.0 N1 B:5BU19 3.9 8.8 1.0 O B:HOH35 4.0 19.5 1.0 O4 B:U18 4.1 11.2 1.0 C2' B:U18 4.2 9.3 1.0 C3' B:U18 4.2 9.3 1.0 O5' B:5BU19 4.3 10.4 1.0 N2 B:G20 4.3 11.8 1.0 O2 B:U18 4.4 9.6 1.0 C2 B:5BU19 4.5 8.7 1.0 P B:5BU19 4.6 10.7 1.0 C1' B:U18 4.6 9.2 1.0 N1 B:G20 4.6 10.6 1.0 C2 B:G20 4.8 11.6 1.0 O3' B:U18 4.9 9.0 1.0

Y.Timsit, S.Bombard. 1.3 A Resolution Structure of the Tridecamer R(Gcguuugaaacgc) To Be Published.