Bromine in PDB 3bna: Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg

The structure of Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg, PDB code: 3bna was solved by M.L.Kopka, A.V.Fratini, R.E.Dickerson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 3.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	24.710, 40.560, 65.620, 90.00, 90.00, 90.00
R / Rfree (%)	13 / n/a

The binding sites of Bromine atom in the Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg (pdb code 3bna). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg, PDB code: 3bna:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg within 5.0Å range: probe atom residue distance (Å) B Occ A:Br9 b:18.3 occ:1.00 BR A:CBR9 0.0 18.3 1.0 C5 A:CBR9 1.9 1.9 1.0 C4 A:CBR9 2.9 13.8 1.0 C6 A:CBR9 2.9 7.8 1.0 N4 A:CBR9 3.0 20.4 1.0 C6 A:DT8 3.6 -4.5 1.0 C2' A:DT8 3.6 37.9 1.0 N1 A:DT8 3.8 8.4 1.0 C5 A:DT8 4.1 7.4 1.0 N3 A:CBR9 4.1 31.0 1.0 N1 A:CBR9 4.1 21.5 1.0 C1' A:DT8 4.3 25.6 1.0 O6 A:DG10 4.3 20.0 1.0 C2 A:DT8 4.4 10.1 1.0 C2 A:CBR9 4.6 24.2 1.0 C7 A:DT8 4.6 14.7 1.0 C4 A:DT8 4.7 22.0 1.0 N3 A:DT8 4.8 13.6 1.0 C3' A:DT8 4.9 25.0 1.0 C6 A:DG10 5.0 22.8 1.0 N7 A:DG10 5.0 23.2 1.0

Bromine binding site 2 out of 2 in the Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg within 5.0Å range: probe atom residue distance (Å) B Occ B:Br21 b:25.6 occ:1.00 BR B:CBR21 0.0 25.6 1.0 C5 B:CBR21 1.9 49.1 1.0 C6 B:CBR21 2.9 6.9 1.0 C4 B:CBR21 2.9 6.7 1.0 N4 B:CBR21 3.0 10.9 1.0 C6 B:DT20 3.6 -3.5 1.0 C5 B:DT20 3.9 -1.4 1.0 N1 B:DT20 3.9 -4.2 1.0 C2' B:DT20 4.1 3.2 1.0 N3 B:CBR21 4.1 -4.6 1.0 N1 B:CBR21 4.1 1.2 1.0 O6 B:DG22 4.2 22.8 1.0 C7 B:DT20 4.3 -15.3 1.0 C4 B:DT20 4.5 42.0 1.0 C2 B:DT20 4.5 9.1 1.0 C1' B:DT20 4.6 8.0 1.0 C2 B:CBR21 4.6 17.7 1.0 N7 B:DG22 4.7 26.5 1.0 N3 B:DT20 4.7 15.0 1.0 C6 B:DG22 4.9 3.4 1.0

A.V.Fratini, M.L.Kopka, H.R.Drew, R.E.Dickerson. Reversible Bending and Helix Geometry in A B-Dna Dodecamer: Cgcgaattbrcgcg. J.Biol.Chem. V. 257 14686 1982.
ISSN: ISSN 0021-9258
PubMed: 7174662