Atomistry » Bromine » PDB 3gw6-3jtk » 3gw6
Atomistry »
  Bromine »
    PDB 3gw6-3jtk »
      3gw6 »

Bromine in PDB 3gw6: Intramolecular Chaperone

Enzymatic activity of Intramolecular Chaperone

All present enzymatic activity of Intramolecular Chaperone:
3.2.1.129;

Protein crystallography data

The structure of Intramolecular Chaperone, PDB code: 3gw6 was solved by E.C.Schulz, A.Dickmanns, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.63 / 2.60
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 62.650, 79.950, 109.580, 81.71, 76.53, 87.11
R / Rfree (%) 20.9 / 25.5

Other elements in 3gw6:

The structure of Intramolecular Chaperone also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms
Calcium (Ca) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Intramolecular Chaperone (pdb code 3gw6). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the Intramolecular Chaperone, PDB code: 3gw6:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6;

Bromine binding site 1 out of 6 in 3gw6

Go back to Bromine Binding Sites List in 3gw6
Bromine binding site 1 out of 6 in the Intramolecular Chaperone


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Intramolecular Chaperone within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br11

b:78.8
occ:1.00
 O B:HOH126 3.1 47.8 1.0
N B:SER847 3.5 41.3 1.0
N B:THR846 3.6 41.6 1.0
CB B:SER847 3.6 41.3 1.0
CA B:GLY845 3.8 38.0 1.0
OD1 B:ASN1000 3.9 48.3 1.0
CG2 B:THR846 3.9 42.8 1.0
C B:GLY845 4.0 38.4 1.0
CA B:SER847 4.2 41.6 1.0
CZ B:PHE997 4.4 52.9 1.0
C B:THR846 4.4 42.9 1.0
CA B:THR846 4.5 43.2 1.0
CE1 B:PHE997 4.5 52.2 1.0
OG1 B:THR850 4.5 35.0 1.0
CB B:THR846 4.8 43.3 1.0
OG B:SER847 4.8 41.9 1.0
O B:GLY845 5.0 39.0 1.0

Bromine binding site 2 out of 6 in 3gw6

Go back to Bromine Binding Sites List in 3gw6
Bromine binding site 2 out of 6 in the Intramolecular Chaperone


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Intramolecular Chaperone within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br38

b:66.2
occ:1.00
 O F:HOH62 2.9 37.1 1.0
O A:HOH175 3.2 43.1 1.0
O F:HOH202 3.3 44.5 1.0
N B:PHE955 3.4 46.6 1.0
N A:VAL983 3.6 42.9 1.0
CB A:ALA982 3.7 57.6 1.0
CA A:GLY1038 3.7 47.6 1.0
C A:ALA982 3.9 57.3 1.0
CA A:VAL983 3.9 42.0 1.0
CA B:HIS954 4.1 45.6 1.0
CB B:PHE955 4.2 45.5 1.0
O B:PHE955 4.2 46.5 1.0
CD A:ARG1035 4.2 47.6 1.0
CB A:VAL983 4.2 42.1 1.0
CD2 B:PHE955 4.3 42.8 1.0
C B:HIS954 4.3 45.9 1.0
CA A:ALA982 4.3 58.1 1.0
CA B:PHE955 4.3 45.6 1.0
CG B:PHE955 4.3 43.6 1.0
O A:ALA982 4.4 57.4 1.0
CB B:HIS954 4.5 45.6 1.0
NE A:ARG1035 4.6 50.0 1.0
N A:GLY1038 4.6 45.8 1.0
N A:ALA982 4.7 59.6 1.0
C B:PHE955 4.7 46.2 1.0
C A:GLY1038 4.8 49.0 1.0
CG2 A:VAL983 4.8 43.2 1.0
O F:HOH186 4.9 36.5 1.0
CB A:ARG1035 4.9 44.1 1.0
O B:ILE953 4.9 42.3 1.0
CD2 B:HIS954 5.0 44.1 1.0

Bromine binding site 3 out of 6 in 3gw6

Go back to Bromine Binding Sites List in 3gw6
Bromine binding site 3 out of 6 in the Intramolecular Chaperone


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Intramolecular Chaperone within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br39

b:77.4
occ:0.73
 O B:HOH136 2.8 65.3 1.0
O4 A:TAM32 3.1 73.4 1.0
CE1 B:HIS954 3.5 44.8 1.0
CB B:ARG952 3.9 69.4 1.0
NE2 B:HIS954 4.0 43.5 1.0
N B:ARG952 4.2 69.1 1.0
CB B:ALA943 4.2 58.2 1.0
C4 A:TAM32 4.3 74.8 0.7
CD B:ARG952 4.3 77.9 1.0
CG B:ARG952 4.4 71.3 1.0
CA B:ARG952 4.5 68.6 1.0
O B:ARG952 4.5 67.2 1.0
CD1 B:TRP940 4.5 39.8 1.0
NH1 B:ARG952 4.6 88.8 1.0
ND1 B:HIS954 4.7 43.4 1.0
C B:ARG952 4.9 67.0 1.0

Bromine binding site 4 out of 6 in 3gw6

Go back to Bromine Binding Sites List in 3gw6
Bromine binding site 4 out of 6 in the Intramolecular Chaperone


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Intramolecular Chaperone within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Br36

b:61.5
occ:1.00
 O E:HOH88 2.9 48.4 1.0
O C:HOH149 2.9 44.8 1.0
N E:PHE955 3.4 43.1 1.0
CA C:GLY1038 3.7 49.8 1.0
N C:VAL983 3.8 48.0 1.0
CD2 E:PHE955 3.9 43.9 1.0
CB E:PHE955 4.0 44.1 1.0
CA C:VAL983 4.0 46.6 1.0
CB C:ALA982 4.0 48.6 1.0
CB C:VAL983 4.1 46.9 1.0
CD C:ARG1035 4.1 42.9 1.0
CG E:PHE955 4.1 44.8 1.0
C C:ALA982 4.1 47.5 1.0
CA E:PHE955 4.2 43.8 1.0
CA E:HIS954 4.2 43.0 1.0
C E:HIS954 4.2 43.1 1.0
O E:PHE955 4.4 44.6 1.0
N C:GLY1038 4.5 47.9 1.0
CB E:HIS954 4.5 42.8 1.0
CA C:ALA982 4.6 48.7 1.0
O C:ALA982 4.7 47.0 1.0
C E:PHE955 4.7 44.3 1.0
CE2 E:PHE955 4.8 47.0 1.0
CG2 C:VAL983 4.8 47.0 1.0
CD2 E:HIS954 4.8 39.4 1.0
NE C:ARG1035 4.8 43.5 1.0
CB C:ARG1035 4.8 39.4 1.0
C C:GLY1038 4.9 51.8 1.0
N C:ALA982 4.9 50.0 1.0

Bromine binding site 5 out of 6 in 3gw6

Go back to Bromine Binding Sites List in 3gw6
Bromine binding site 5 out of 6 in the Intramolecular Chaperone


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Intramolecular Chaperone within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br8

b:64.6
occ:1.00
 O C:HOH176 3.4 54.7 1.0
N C:PHE955 3.5 54.8 1.0
N D:VAL983 3.6 42.5 1.0
CA D:GLY1038 3.7 41.0 1.0
C D:ALA982 3.8 50.1 1.0
CA D:VAL983 3.9 42.9 1.0
CA C:HIS954 3.9 55.9 1.0
CB D:ALA982 3.9 50.5 1.0
CD D:ARG1035 4.1 48.5 1.0
CB C:HIS954 4.1 56.0 1.0
CB D:VAL983 4.1 43.0 1.0
O D:ALA982 4.2 49.9 1.0
C C:HIS954 4.2 55.2 1.0
CD2 C:PHE955 4.4 50.6 1.0
CA D:ALA982 4.4 50.9 1.0
CA C:PHE955 4.4 53.0 1.0
CB C:PHE955 4.4 52.9 1.0
CG C:PHE955 4.5 51.4 1.0
O C:PHE955 4.5 52.2 1.0
N D:GLY1038 4.6 40.8 1.0
CB D:ARG1035 4.7 49.3 1.0
NE D:ARG1035 4.7 47.0 1.0
C D:GLY1038 4.8 41.5 1.0
O C:ILE953 4.8 50.2 1.0
N D:ALA982 4.8 52.1 1.0
CG2 D:VAL983 4.9 41.1 1.0
C C:PHE955 4.9 52.5 1.0
CG C:HIS954 5.0 56.8 1.0
CG D:ARG1035 5.0 48.0 1.0

Bromine binding site 6 out of 6 in 3gw6

Go back to Bromine Binding Sites List in 3gw6
Bromine binding site 6 out of 6 in the Intramolecular Chaperone


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Intramolecular Chaperone within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Br37

b:68.5
occ:1.00
 N A:PHE955 3.6 44.8 1.0
CA F:GLY1038 3.6 62.7 1.0
N F:VAL983 3.8 39.5 1.0
CD F:ARG1035 4.0 46.7 1.0
CG2 F:VAL983 4.0 40.4 1.0
CB A:PHE955 4.0 44.8 1.0
CA F:VAL983 4.1 39.7 1.0
CB F:ALA982 4.1 41.8 1.0
C F:ALA982 4.1 41.5 1.0
CD2 A:PHE955 4.1 40.4 1.0
CG1 F:VAL983 4.2 39.1 1.0
CG A:PHE955 4.2 43.2 1.0
CA A:PHE955 4.3 44.8 1.0
CB F:VAL983 4.3 40.0 1.0
O A:PHE955 4.4 46.7 1.0
N F:GLY1038 4.4 62.3 1.0
CA A:HIS954 4.4 44.4 1.0
C A:HIS954 4.5 44.6 1.0
CB F:ARG1035 4.5 43.4 1.0
O F:ALA982 4.5 41.9 1.0
ND2 B:ASN906 4.6 66.8 1.0
CA F:ALA982 4.6 42.6 1.0
NE F:ARG1035 4.6 50.3 1.0
C F:GLY1038 4.7 63.5 1.0
O B:HOH69 4.7 48.2 1.0
C A:PHE955 4.8 45.4 1.0
CG F:ARG1035 4.9 45.7 1.0
CD2 A:HIS954 4.9 41.3 1.0
CB A:HIS954 4.9 43.7 1.0
N F:ALA982 4.9 44.8 1.0
CE2 A:PHE955 5.0 43.5 1.0

Reference:

E.C.Schulz, A.Dickmanns, H.Urlaub, A.Schmitt, M.Muhlenhoff, K.Stummeyer, D.Schwarzer, R.Gerardy-Schahn, R.Ficner. Crystal Structure of An Intramolecular Chaperone Mediating Triple-Beta-Helix Folding. Nat.Struct.Mol.Biol. V. 17 210 2010.
ISSN: ISSN 1545-9993
PubMed: 20118935
DOI: 10.1038/NSMB.1746
Page generated: Mon Jul 7 05:23:46 2025

Last articles

Mg in 721P
Mg in 6ZXH
Mg in 6ZXG
Mg in 6ZZ6
Mg in 6ZYM
Mg in 6ZY9
Mg in 6ZY4
Mg in 6ZVH
Mg in 6ZXQ
Mg in 6ZXM
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy