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Bromine in PDB 3lm7: Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081

Protein crystallography data

The structure of Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081, PDB code: 3lm7 was solved by A.Joachimiak, N.E.C.Duke, B.Feldmann, R.Wu, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 79.56 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.947, 60.453, 159.119, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 19.2

Other elements in 3lm7:

The structure of Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081 also contains other interesting chemical elements:

Potassium (K) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081 (pdb code 3lm7). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081, PDB code: 3lm7:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 3lm7

Go back to Bromine Binding Sites List in 3lm7
Bromine binding site 1 out of 2 in the Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br301

b:17.5
occ:1.00
O A:HOH471 3.0 39.5 1.0
O A:HOH659 3.2 44.8 1.0
N A:LEU69 3.3 10.1 1.0
N A:GLY72 3.5 19.1 1.0
NZ A:LYS160 3.5 19.9 1.0
N A:GLY70 3.6 14.9 1.0
CB A:ASN93 3.7 4.4 1.0
CG A:ASN93 3.8 7.5 1.0
CB A:LEU69 3.8 12.0 1.0
CA A:GLY72 3.9 17.8 1.0
CA A:LEU69 4.0 12.5 1.0
OD1 A:ASN93 4.1 6.6 1.0
CA A:GLY68 4.1 9.9 1.0
CD1 A:LEU69 4.1 11.8 1.0
N A:ALA71 4.2 21.2 1.0
O A:HOH488 4.2 22.9 1.0
ND2 A:ASN93 4.2 6.8 1.0
C A:GLY68 4.2 10.3 1.0
O A:HOH459 4.2 32.2 1.0
CG A:LEU69 4.3 10.7 1.0
O A:HOH300 4.3 20.9 1.0
C A:LEU69 4.3 13.6 1.0
C A:GLY70 4.5 20.9 1.0
C A:ALA71 4.6 20.5 1.0
CA A:GLY70 4.6 19.4 1.0
O A:HOH343 4.7 11.1 1.0
CA A:ALA71 4.7 21.3 1.0
OH A:TYR218 4.9 18.2 1.0
CE A:LYS160 4.9 16.4 1.0

Bromine binding site 2 out of 2 in 3lm7

Go back to Bromine Binding Sites List in 3lm7
Bromine binding site 2 out of 2 in the Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br302

b:9.7
occ:1.00
O B:HOH489 3.2 31.3 1.0
O B:HOH486 3.2 24.6 1.0
N B:LEU69 3.3 9.1 1.0
NZ B:LYS160 3.3 10.4 1.0
N B:GLY70 3.5 11.0 1.0
N B:GLY72 3.5 9.8 1.0
CB B:ASN93 3.7 5.1 1.0
CB B:LEU69 3.7 8.5 1.0
CG B:ASN93 3.8 6.6 1.0
CA B:LEU69 4.0 8.9 1.0
CA B:GLY72 4.0 8.8 1.0
N B:ALA71 4.1 11.9 1.0
OD1 B:ASN93 4.1 8.1 1.0
CA B:GLY68 4.2 8.8 1.0
CG B:LEU69 4.2 5.7 1.0
CD1 B:LEU69 4.2 2.6 1.0
C B:GLY68 4.2 9.8 1.0
O B:HOH488 4.2 18.1 1.0
C B:LEU69 4.2 10.6 1.0
O B:HOH485 4.3 12.3 1.0
ND2 B:ASN93 4.3 5.9 1.0
O B:HOH490 4.4 17.6 1.0
C B:GLY70 4.4 12.3 1.0
CA B:GLY70 4.4 11.0 1.0
C B:ALA71 4.6 12.2 1.0
O B:HOH487 4.6 11.5 1.0
CA B:ALA71 4.8 11.9 1.0
CE B:LYS160 4.8 11.6 1.0

Reference:

A.Joachimiak, N.E.C.Duke, B.Feldmann, R.Wu. Crystal Structure of DUF1341 Representative, From Yersinia Enterocolitica Subsp. Enterocolitica 8081 To Be Published.
Page generated: Wed Jul 10 19:54:26 2024

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