Bromine in PDB 3ogd: Alka Undamaged Dna Complex: Interrogation of A G*:C Base Pair

All present enzymatic activity of Alka Undamaged Dna Complex: Interrogation of A G*:C Base Pair:
3.2.2.21;

The structure of Alka Undamaged Dna Complex: Interrogation of A G*:C Base Pair, PDB code: 3ogd was solved by B.R.Bowman, S.Lee, S.Wang, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.18 / 2.80
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	139.700, 139.700, 95.300, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 26.9

The binding sites of Bromine atom in the Alka Undamaged Dna Complex: Interrogation of A G*:C Base Pair (pdb code 3ogd). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Alka Undamaged Dna Complex: Interrogation of A G*:C Base Pair, PDB code: 3ogd:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Alka Undamaged Dna Complex: Interrogation of A G*:C Base Pair


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Alka Undamaged Dna Complex: Interrogation of A G*:C Base Pair within 5.0Å range: probe atom residue distance (Å) B Occ C:Br5 b:0.0 occ:1.00 BR C:BRU5 0.0 0.0 1.0 C5 C:BRU5 1.9 0.7 1.0 C6 C:BRU5 2.8 0.1 1.0 C4 C:BRU5 2.9 0.8 1.0 O4 C:BRU5 3.1 0.0 1.0 C2' C:DA4 4.1 0.3 1.0 N1 C:BRU5 4.1 0.4 1.0 N3 C:BRU5 4.2 0.1 1.0 OP2 C:BRU5 4.2 0.9 1.0 C2 C:BRU5 4.7 0.7 1.0 N9 C:DA4 4.7 0.0 1.0 C8 C:DA4 4.8 0.8 1.0 O6 C:DG6 4.8 0.1 1.0 C1' C:DA4 4.9 0.7 1.0 C4 C:DA4 5.0 0.9 1.0

Bromine binding site 2 out of 2 in the Alka Undamaged Dna Complex: Interrogation of A G*:C Base Pair


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Alka Undamaged Dna Complex: Interrogation of A G*:C Base Pair within 5.0Å range: probe atom residue distance (Å) B Occ C:Br9 b:0.7 occ:1.00 BR C:BRU9 0.0 0.7 1.0 C5 C:BRU9 1.9 0.8 1.0 C6 C:BRU9 2.8 0.6 1.0 C4 C:BRU9 2.9 0.9 1.0 O4 C:BRU9 3.1 0.8 1.0 C2' C:DC8 3.3 0.9 1.0 OP2 C:BRU9 3.5 0.9 1.0 C6 C:DC8 3.9 0.3 1.0 N1 C:DC8 4.0 0.9 1.0 C3' C:DC8 4.1 0.1 1.0 N1 C:BRU9 4.1 0.2 1.0 N3 C:BRU9 4.2 0.1 1.0 C1' C:DC8 4.2 0.7 1.0 C5 C:DC8 4.4 0.4 1.0 C2 C:DC8 4.5 0.1 1.0 C2 C:BRU9 4.7 0.9 1.0 P C:BRU9 4.8 0.3 1.0 C4 C:DC8 4.8 0.2 1.0 N3 C:DC8 4.9 0.1 1.0 O6 C:DG10 4.9 0.7 1.0 O3' C:DC8 4.9 0.6 1.0

B.R.Bowman, S.Lee, S.Wang, G.L.Verdine. Structure of Escherichia Coli Alka in Complex with Undamaged Dna. J.Biol.Chem. V. 285 35783 2010.
ISSN: ISSN 0021-9258
PubMed: 20843803
DOI: 10.1074/JBC.M110.155663