Bromine in PDB 3td1: Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site in Complex with Geneticin

The structure of Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site in Complex with Geneticin, PDB code: 3td1 was solved by J.Kondo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.90 / 2.10
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	33.470, 88.300, 46.210, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 24.3

The binding sites of Bromine atom in the Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site in Complex with Geneticin (pdb code 3td1). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site in Complex with Geneticin, PDB code: 3td1:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in the Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site in Complex with Geneticin


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site in Complex with Geneticin within 5.0Å range: probe atom residue distance (Å) B Occ A:Br11 b:44.1 occ:1.00 BR A:5BU11 0.0 44.1 1.0 C5 A:5BU11 1.9 37.7 1.0 C6 A:5BU11 2.8 36.4 1.0 C4 A:5BU11 2.9 37.0 1.0 O4 A:5BU11 3.2 36.8 1.0 O A:HOH249 3.4 46.3 1.0 O A:HOH144 3.5 40.5 1.0 O A:HOH136 3.6 50.8 1.0 O A:HOH191 3.6 42.2 1.0 O A:HOH208 3.7 42.8 1.0 C8 A:G10 3.7 31.9 1.0 N7 A:G10 3.7 32.1 1.0 C5 A:G10 3.7 30.9 1.0 N9 A:G10 3.8 32.3 1.0 C4 A:G10 3.8 31.3 1.0 OP2 A:5BU11 3.8 37.4 1.0 N1 A:5BU11 4.1 35.7 1.0 N3 A:5BU11 4.1 35.3 1.0 C2' A:G10 4.1 34.1 1.0 C3' A:G10 4.1 35.0 1.0 O5' A:5BU11 4.3 37.2 1.0 C6 A:G10 4.4 29.6 1.0 N3 A:G10 4.4 31.1 1.0 O A:HOH117 4.5 31.0 1.0 C1' A:G10 4.5 33.1 1.0 O A:HOH181 4.5 48.8 1.0 P A:5BU11 4.6 37.2 1.0 C2 A:5BU11 4.7 36.1 1.0 N4 A:C12 4.8 27.9 1.0 C5 A:C12 4.9 30.7 1.0 N1 A:G10 4.9 30.4 1.0 C2 A:G10 4.9 30.0 1.0 O3' A:G10 4.9 37.4 1.0 O5' A:G10 4.9 38.0 1.0

Bromine binding site 2 out of 2 in the Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site in Complex with Geneticin


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Bacterial A1408G-Mutant and the Protozoa Cytoplasmic Ribosomal Decoding Site in Complex with Geneticin within 5.0Å range: probe atom residue distance (Å) B Occ B:Br34 b:36.6 occ:1.00 BR B:5BU34 0.0 36.6 1.0 C5 B:5BU34 1.9 32.3 1.0 C6 B:5BU34 2.8 28.3 1.0 C4 B:5BU34 2.9 31.1 1.0 O4 B:5BU34 3.1 29.9 1.0 O B:HOH131 3.3 42.1 1.0 O B:HOH168 3.5 29.7 1.0 O B:HOH116 3.5 25.6 1.0 O B:HOH104 3.5 25.8 1.0 C8 B:G33 3.6 26.6 1.0 N7 B:G33 3.6 26.4 1.0 OP2 B:5BU34 3.7 29.6 1.0 O B:HOH171 3.8 35.8 1.0 N9 B:G33 3.8 25.6 1.0 C5 B:G33 3.8 26.2 1.0 C4 B:G33 3.9 26.1 1.0 C3' B:G33 4.1 24.7 1.0 N3 B:5BU34 4.1 30.0 1.0 N1 B:5BU34 4.1 28.6 1.0 C2' B:G33 4.2 24.6 1.0 O B:HOH111 4.3 33.5 1.0 O B:HOH234 4.4 39.3 1.0 O5' B:5BU34 4.4 28.7 1.0 C5 B:C35 4.5 26.6 1.0 N4 B:C35 4.5 24.4 1.0 C1' B:G33 4.5 24.9 1.0 C6 B:G33 4.6 25.4 1.0 P B:5BU34 4.6 29.1 1.0 N3 B:G33 4.6 24.4 1.0 O5' B:G33 4.7 27.3 1.0 C2 B:5BU34 4.7 29.6 1.0 C4 B:C35 4.9 26.1 1.0 O3' B:G33 4.9 25.9 1.0

J.Kondo, J.Kondo. N/A N/A.
ISSN: ISSN 1433-7851
PubMed: 22110016
DOI: 10.1002/ANIE.201106084