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Bromine in PDB 4gr3: Crystal Structure of the Catalytic Domain of Human MMP12 in Complex with Selective Phosphinic Inhibitor RXP470A

Enzymatic activity of Crystal Structure of the Catalytic Domain of Human MMP12 in Complex with Selective Phosphinic Inhibitor RXP470A

All present enzymatic activity of Crystal Structure of the Catalytic Domain of Human MMP12 in Complex with Selective Phosphinic Inhibitor RXP470A:
3.4.24.65;

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of Human MMP12 in Complex with Selective Phosphinic Inhibitor RXP470A, PDB code: 4gr3 was solved by E.A.Stura, L.Vera, F.Beau, L.Devel, E.Cassar-Lajeunesse, V.Dive, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.56 / 1.49
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.960, 63.130, 37.310, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 21.6

Other elements in 4gr3:

The structure of Crystal Structure of the Catalytic Domain of Human MMP12 in Complex with Selective Phosphinic Inhibitor RXP470A also contains other interesting chemical elements:

Calcium (Ca) 3 atoms
Zinc (Zn) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of the Catalytic Domain of Human MMP12 in Complex with Selective Phosphinic Inhibitor RXP470A (pdb code 4gr3). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of the Catalytic Domain of Human MMP12 in Complex with Selective Phosphinic Inhibitor RXP470A, PDB code: 4gr3:

Bromine binding site 1 out of 1 in 4gr3

Go back to Bromine Binding Sites List in 4gr3
Bromine binding site 1 out of 1 in the Crystal Structure of the Catalytic Domain of Human MMP12 in Complex with Selective Phosphinic Inhibitor RXP470A


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Catalytic Domain of Human MMP12 in Complex with Selective Phosphinic Inhibitor RXP470A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br306

b:59.0
occ:1.00
BR1 A:R45306 0.0 59.0 1.0
C22 A:R45306 1.9 24.4 1.0
C23 A:R45306 2.9 20.7 1.0
C21 A:R45306 2.9 23.7 1.0
ND1 A:HIS172 3.5 27.1 1.0
O A:HOH684 3.7 29.2 1.0
O A:HOH526 3.9 37.9 1.0
CE1 A:HIS172 4.0 28.9 1.0
O A:HOH667 4.0 38.8 1.0
C24 A:R45306 4.2 14.6 1.0
C20 A:R45306 4.2 20.2 1.0
CG A:HIS172 4.6 17.8 1.0
C19 A:R45306 4.7 15.5 1.0

Reference:

B.Czarny, E.A.Stura, L.Devel, L.Vera, E.Cassar-Lajeunesse, F.Beau, V.Calderone, M.Fragai, C.Luchinat, V.Dive. Molecular Determinants of A Selective Matrix Metalloprotease-12 Inhibitor: Insights From Crystallography and Thermodynamic Studies. J.Med.Chem. V. 56 1149 2013.
ISSN: ISSN 0022-2623
PubMed: 23343195
DOI: 10.1021/JM301574D
Page generated: Mon Jul 7 06:40:50 2025

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