Atomistry » Bromine » PDB 4kvh-4my6 » 4my1
Atomistry »
  Bromine »
    PDB 4kvh-4my6 »
      4my1 »

Bromine in PDB 4my1: Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68

Enzymatic activity of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68

All present enzymatic activity of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68:
1.1.1.205;

Protein crystallography data

The structure of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68, PDB code: 4my1 was solved by Y.Kim, M.Makowska-Grzyska, M.Gu, W.F.Anderson, A.Joachimiak, Csgid, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.25 / 2.60
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 83.220, 89.391, 103.987, 81.13, 89.95, 83.59
R / Rfree (%) 19.4 / 25.3

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 (pdb code 4my1). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 8 binding sites of Bromine where determined in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68, PDB code: 4my1:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Bromine binding site 1 out of 8 in 4my1

Go back to Bromine Binding Sites List in 4my1
Bromine binding site 1 out of 8 in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br501

b:72.5
occ:0.45
BR1 A:P68501 0.0 72.5 0.5
C8 A:P68501 1.9 59.0 1.0
C9 A:P68501 2.8 59.0 1.0
C7 A:P68501 2.8 59.0 1.0
O C:VAL25 3.7 66.5 1.0
O C:GLY444 3.8 45.8 1.0
C C:GLY444 3.8 45.0 1.0
CA C:GLY444 3.9 44.2 1.0
CD C:PRO27 3.9 60.7 1.0
C10 A:P68501 4.1 59.0 1.0
CD2 A:HIS254 4.1 50.5 1.0
C6 A:P68501 4.1 58.9 1.0
CB A:HIS254 4.3 50.9 1.0
N C:TYR445 4.4 45.0 1.0
CG C:PRO27 4.4 58.9 1.0
OG C:SER23 4.4 56.2 1.0
CG A:HIS254 4.6 50.2 1.0
C5 A:P68501 4.6 59.0 1.0
CA C:LEU26 4.7 66.1 1.0
C C:VAL25 4.8 67.3 1.0
CB C:SER23 4.9 57.0 1.0
OG A:SER257 4.9 61.4 1.0
N C:PRO27 4.9 60.1 1.0

Bromine binding site 2 out of 8 in 4my1

Go back to Bromine Binding Sites List in 4my1
Bromine binding site 2 out of 8 in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br501

b:0.8
occ:1.00
BR1 B:P68501 0.0 0.8 1.0
C8 B:P68501 1.9 56.2 1.0
C9 B:P68501 2.8 56.1 1.0
C7 B:P68501 2.8 56.1 1.0
O A:GLY444 3.6 50.1 1.0
C A:GLY444 3.7 49.5 1.0
CB B:HIS254 3.8 51.5 1.0
O A:VAL25 3.9 69.4 1.0
CA A:GLY444 3.9 49.7 1.0
CD A:PRO27 4.0 60.8 1.0
CD2 B:HIS254 4.1 51.5 1.0
C10 B:P68501 4.1 56.0 1.0
C6 B:P68501 4.1 56.0 1.0
CG B:HIS254 4.3 51.1 1.0
N A:TYR445 4.4 48.8 1.0
OG A:SER23 4.5 64.0 1.0
CG A:PRO27 4.6 60.0 1.0
C5 B:P68501 4.6 56.0 1.0
CA A:LEU26 4.6 64.3 1.0
CD2 A:LEU26 4.7 60.5 1.0
N A:PRO27 4.9 61.6 1.0
C A:VAL25 4.9 70.3 1.0

Bromine binding site 3 out of 8 in 4my1

Go back to Bromine Binding Sites List in 4my1
Bromine binding site 3 out of 8 in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Br501

b:0.1
occ:1.00
BR1 C:P68501 0.0 0.1 1.0
C8 C:P68501 1.9 55.6 1.0
C7 C:P68501 2.9 55.6 1.0
C9 C:P68501 2.9 55.6 1.0
O D:GLY444 3.6 49.4 1.0
ND1 C:HIS254 3.7 54.5 1.0
C D:GLY444 3.7 48.9 1.0
CB C:HIS254 3.9 54.2 1.0
O D:VAL25 4.0 60.2 1.0
CA D:GLY444 4.0 48.8 1.0
C6 C:P68501 4.2 55.6 1.0
C10 C:P68501 4.2 55.6 1.0
OG D:SER23 4.2 59.2 1.0
CG C:HIS254 4.2 53.5 1.0
OG C:SER257 4.3 62.0 1.0
N D:TYR445 4.3 48.8 1.0
CD D:PRO27 4.5 63.0 1.0
CD2 D:LEU26 4.5 60.9 1.0
C5 C:P68501 4.7 55.6 1.0
CB D:SER23 4.7 59.2 1.0
CE1 C:HIS254 4.8 54.0 1.0
CB C:SER257 4.8 59.9 1.0
CA D:TYR445 4.8 49.2 1.0
CG D:PRO27 4.9 62.6 1.0
CA D:LEU26 4.9 61.5 1.0

Bromine binding site 4 out of 8 in 4my1

Go back to Bromine Binding Sites List in 4my1
Bromine binding site 4 out of 8 in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Br501

b:0.1
occ:1.00
BR1 D:P68501 0.0 0.1 1.0
C8 D:P68501 1.9 61.9 1.0
C9 D:P68501 2.8 61.9 1.0
C7 D:P68501 2.9 61.8 1.0
O B:GLY444 3.8 49.5 1.0
O B:VAL25 3.9 59.8 1.0
CB D:HIS254 3.9 63.3 1.0
C B:GLY444 4.0 49.0 1.0
CD2 D:HIS254 4.0 63.3 1.0
CD B:PRO27 4.1 57.5 1.0
CA B:GLY444 4.1 49.3 1.0
C10 D:P68501 4.1 61.8 1.0
C6 D:P68501 4.2 61.7 1.0
CG D:HIS254 4.3 62.7 1.0
CD2 B:LEU26 4.4 65.7 1.0
OG B:SER23 4.5 60.9 1.0
N B:TYR445 4.6 48.1 1.0
C5 D:P68501 4.7 61.6 1.0
CA B:LEU26 4.8 60.2 1.0

Bromine binding site 5 out of 8 in 4my1

Go back to Bromine Binding Sites List in 4my1
Bromine binding site 5 out of 8 in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Br502

b:0.8
occ:1.00
BR1 E:P68502 0.0 0.8 1.0
C8 E:P68502 1.9 68.6 1.0
C9 E:P68502 2.8 68.6 1.0
C7 E:P68502 2.8 68.6 1.0
CB E:HIS254 3.6 63.0 1.0
ND1 E:HIS254 3.7 63.6 1.0
O E:HOH606 4.0 46.6 1.0
CG E:HIS254 4.1 62.5 1.0
C6 E:P68502 4.1 68.5 1.0
C10 E:P68502 4.1 68.5 1.0
C G:GLY444 4.2 54.2 1.0
O G:GLY444 4.2 55.2 1.0
CA G:GLY444 4.3 53.7 1.0
O G:VAL25 4.5 72.3 1.0
CD G:PRO27 4.6 67.2 1.0
N G:TYR445 4.6 53.8 1.0
C5 E:P68502 4.6 68.5 1.0
CG G:PRO27 4.8 65.7 1.0
OG E:SER257 4.9 82.9 1.0
CE1 E:HIS254 4.9 62.9 1.0
CA E:HIS254 4.9 62.5 1.0
CB E:SER257 4.9 80.3 1.0

Bromine binding site 6 out of 8 in 4my1

Go back to Bromine Binding Sites List in 4my1
Bromine binding site 6 out of 8 in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Br503

b:0.1
occ:1.00
BR1 E:P68503 0.0 0.1 1.0
C8 E:P68503 1.9 61.1 1.0
C9 E:P68503 2.9 61.1 1.0
C7 E:P68503 2.9 61.1 1.0
C E:GLY444 3.4 63.8 1.0
O E:GLY444 3.5 66.6 1.0
CA E:GLY444 3.5 63.4 1.0
CD2 F:HIS254 3.8 57.0 1.0
O E:VAL25 3.8 72.1 1.0
OG E:SER23 3.9 79.4 1.0
N E:TYR445 4.0 61.6 1.0
CB F:HIS254 4.1 57.9 1.0
C10 E:P68503 4.2 61.2 1.0
C6 E:P68503 4.2 61.2 1.0
CG F:HIS254 4.3 56.8 1.0
CD E:PRO27 4.5 67.0 1.0
CB E:SER23 4.5 79.1 1.0
CD2 E:LEU26 4.6 70.1 1.0
C5 E:P68503 4.7 61.3 1.0
CA E:TYR445 4.7 62.6 1.0
CG E:PRO27 4.9 65.8 1.0
N E:GLY444 4.9 60.8 1.0
NE2 F:HIS254 5.0 56.9 1.0
C E:VAL25 5.0 73.0 1.0

Bromine binding site 7 out of 8 in 4my1

Go back to Bromine Binding Sites List in 4my1
Bromine binding site 7 out of 8 in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Br501

b:0.6
occ:1.00
BR1 G:P68501 0.0 0.6 1.0
C8 G:P68501 1.9 60.3 1.0
C7 G:P68501 2.8 60.3 1.0
C9 G:P68501 2.9 60.3 1.0
CD2 G:HIS254 3.7 54.6 1.0
CB G:HIS254 3.8 53.7 1.0
O H:VAL25 3.9 67.9 1.0
O H:GLY444 3.9 55.3 1.0
C H:GLY444 3.9 54.0 1.0
CA H:GLY444 4.1 53.6 1.0
CG G:HIS254 4.1 54.0 1.0
C6 G:P68501 4.1 60.2 1.0
C10 G:P68501 4.1 60.2 1.0
OG H:SER23 4.2 64.0 1.0
CD H:PRO27 4.3 64.6 1.0
N H:TYR445 4.5 53.1 1.0
CG H:PRO27 4.6 63.2 1.0
CB H:SER23 4.6 64.5 1.0
C5 G:P68501 4.7 60.1 1.0
CD2 H:LEU26 4.7 67.0 1.0
CB G:SER257 5.0 68.2 1.0
C H:VAL25 5.0 69.2 1.0

Bromine binding site 8 out of 8 in 4my1

Go back to Bromine Binding Sites List in 4my1
Bromine binding site 8 out of 8 in the Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Br501

b:0.6
occ:1.00
BR1 H:P68501 0.0 0.6 1.0
C8 H:P68501 1.9 56.2 1.0
C9 H:P68501 2.8 56.2 1.0
C7 H:P68501 2.9 56.2 1.0
C F:GLY444 3.7 47.0 1.0
CA F:GLY444 3.7 47.1 1.0
O F:VAL25 3.7 58.6 1.0
CB H:HIS254 3.8 53.0 1.0
O F:GLY444 3.9 47.0 1.0
CD2 H:HIS254 3.9 49.6 1.0
CD F:PRO27 3.9 55.8 1.0
C10 H:P68501 4.1 56.2 1.0
N F:TYR445 4.1 47.0 1.0
CG H:HIS254 4.1 50.5 1.0
C6 H:P68501 4.1 56.1 1.0
OG F:SER23 4.5 58.9 1.0
CD2 F:LEU26 4.5 65.3 1.0
CA F:LEU26 4.6 59.5 1.0
C5 H:P68501 4.6 56.1 1.0
C F:VAL25 4.8 60.1 1.0
CB F:SER23 4.9 58.7 1.0
CA F:TYR445 4.9 47.0 1.0
N F:PRO27 4.9 56.1 1.0
CG F:PRO27 4.9 55.0 1.0

Reference:

Y.Kim, M.Makowska-Grzyska, M.Gu, W.F.Anderson, A.Joachimiak, Csgid. Crystal Structure of the Inosine 5'-Monophosphate Dehydrogenase, with A Internal Deletion of Cbs Domain From Bacillus Anthracis Str. Ames Complexed with P68 To Be Published 2013.
Page generated: Mon Jul 7 07:06:53 2025

Last articles

Hg in 2XGX
Hg in 2X49
Hg in 2WIU
Hg in 2WPV
Hg in 2X1X
Hg in 2W4R
Hg in 2W9M
Hg in 2QFD
Hg in 2V7E
Hg in 2VOX
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy