Bromine in PDB 4p3u: Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1)

The structure of Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1), PDB code: 4p3u was solved by J.Kondo, M.Koganei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	100.00 / 3.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	155.380, 32.730, 80.990, 90.00, 117.06, 90.00
R / Rfree (%)	29.5 / 30.2

The binding sites of Bromine atom in the Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1) (pdb code 4p3u). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 4 binding sites of Bromine where determined in the Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1), PDB code: 4p3u:
Jump to Bromine binding site number: 1; 2; 3; 4;

Bromine binding site 1 out of 4 in the Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Br11 b:0.4 occ:1.00 BR A:5BU11 0.0 0.4 1.0 C5 A:5BU11 1.9 0.9 1.0 C6 A:5BU11 2.8 0.4 1.0 C4 A:5BU11 2.9 0.8 1.0 O4 A:5BU11 3.2 0.8 1.0 OP2 A:5BU11 3.5 0.4 1.0 C5 A:G10 3.8 0.6 1.0 C4 A:G10 4.0 0.9 1.0 N7 A:G10 4.0 0.4 1.0 C6 A:G10 4.0 0.3 1.0 N1 A:5BU11 4.2 0.8 1.0 N3 A:5BU11 4.2 0.8 1.0 O5' A:5BU11 4.2 0.5 1.0 N4 A:C12 4.2 0.2 1.0 C8 A:G10 4.2 0.2 1.0 N9 A:G10 4.2 0.4 1.0 N1 A:G10 4.4 0.9 1.0 P A:5BU11 4.4 0.5 1.0 C2' A:G10 4.5 0.1 1.0 N3 A:G10 4.5 0.5 1.0 C3' A:G10 4.5 0.4 1.0 O6 A:G10 4.5 0.8 1.0 C5 A:C12 4.5 0.2 1.0 C2 A:G10 4.7 0.5 1.0 C4 A:C12 4.7 0.1 1.0 C2 A:5BU11 4.7 0.9 1.0 C1' A:G10 5.0 0.7 1.0

Bromine binding site 2 out of 4 in the Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Br34 b:0.8 occ:1.00 BR B:5BU34 0.0 0.8 1.0 C5 B:5BU34 1.9 0.1 1.0 C6 B:5BU34 2.8 0.3 1.0 C4 B:5BU34 2.9 0.3 1.0 O4 B:5BU34 3.2 0.8 1.0 C5 B:G33 3.5 0.6 1.0 C4 B:G33 3.7 0.8 1.0 N7 B:G33 3.8 0.9 1.0 OP2 B:5BU34 3.9 0.9 1.0 C6 B:G33 3.9 0.1 1.0 N9 B:G33 4.0 0.6 1.0 C8 B:G33 4.0 0.7 1.0 N1 B:5BU34 4.1 0.6 1.0 N3 B:5BU34 4.1 0.9 1.0 N3 B:G33 4.2 0.1 1.0 N1 B:G33 4.3 0.2 1.0 C2' B:G33 4.4 0.8 1.0 C2 B:G33 4.4 0.4 1.0 C3' B:G33 4.5 0.6 1.0 O6 B:G33 4.5 0.3 1.0 O5' B:5BU34 4.5 0.4 1.0 C2 B:5BU34 4.7 0.6 1.0 P B:5BU34 4.7 0.5 1.0 C1' B:G33 4.8 0.2 1.0 C5 B:C35 4.9 0.1 1.0 O B:HOH102 4.9 72.8 1.0 N4 B:C35 5.0 0.4 1.0

Bromine binding site 3 out of 4 in the Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br11 b:0.4 occ:1.00 BR C:5BU11 0.0 0.4 1.0 C5 C:5BU11 1.9 0.6 1.0 C6 C:5BU11 2.8 0.1 1.0 C4 C:5BU11 2.9 0.6 1.0 O4 C:5BU11 3.2 0.3 1.0 C5 C:G10 3.6 0.4 1.0 N7 C:G10 3.7 0.8 1.0 OP2 C:5BU11 3.8 0.1 1.0 C4 C:G10 3.8 0.5 1.0 C6 C:G10 3.9 0.0 1.0 C8 C:G10 4.0 0.7 1.0 N9 C:G10 4.0 0.7 1.0 N1 C:5BU11 4.1 0.9 1.0 N3 C:5BU11 4.2 0.6 1.0 O6 C:G10 4.4 0.9 1.0 N3 C:G10 4.4 0.9 1.0 N1 C:G10 4.4 0.7 1.0 C2' C:G10 4.4 0.2 1.0 O5' C:5BU11 4.4 0.6 1.0 C3' C:G10 4.6 0.9 1.0 C2 C:G10 4.6 0.7 1.0 C2 C:5BU11 4.7 0.2 1.0 P C:5BU11 4.7 0.9 1.0 C1' C:G10 4.9 0.6 1.0

Bromine binding site 4 out of 4 in the Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ D:Br34 b:0.3 occ:1.00 BR D:5BU34 0.0 0.3 1.0 C5 D:5BU34 1.9 0.1 1.0 C6 D:5BU34 2.8 0.4 1.0 C4 D:5BU34 2.9 0.7 1.0 O4 D:5BU34 3.2 0.6 1.0 C4 D:G33 3.6 0.8 1.0 C5 D:G33 3.7 0.9 1.0 N3 D:G33 4.0 0.9 1.0 C6 D:G33 4.0 0.8 1.0 N9 D:G33 4.0 0.6 1.0 OP2 D:5BU34 4.1 0.5 1.0 C2' D:G33 4.1 0.1 1.0 N7 D:G33 4.1 0.9 1.0 C2 D:G33 4.1 0.7 1.0 N1 D:5BU34 4.1 1.0 1.0 N1 D:G33 4.1 0.5 1.0 N3 D:5BU34 4.1 0.2 1.0 C8 D:G33 4.2 0.6 1.0 O5' D:5BU34 4.5 0.1 1.0 O6 D:G33 4.6 0.0 1.0 C3' D:G33 4.6 0.8 1.0 C1' D:G33 4.7 0.0 1.0 C2 D:5BU34 4.7 0.3 1.0 P D:5BU34 4.9 0.6 1.0 N2 D:G33 4.9 0.7 1.0 O2' D:G33 5.0 0.6 1.0

J.Kondo, M.Koganei. Crystal Structure of the Bacterial A1408U-Mutant Ribosomal Decoding Site (C2 Form 1) To Be Published.