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Bromine in PDB 4y4u: Endothiapepsin in Complex with Fragment 14

Enzymatic activity of Endothiapepsin in Complex with Fragment 14

All present enzymatic activity of Endothiapepsin in Complex with Fragment 14:
3.4.23.22;

Protein crystallography data

The structure of Endothiapepsin in Complex with Fragment 14, PDB code: 4y4u was solved by N.Radeva, M.Uehlein, M.S.Weiss, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.15 / 1.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.599, 72.823, 52.732, 90.00, 108.86, 90.00
R / Rfree (%) 15.5 / 18.9

Other elements in 4y4u:

The structure of Endothiapepsin in Complex with Fragment 14 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Endothiapepsin in Complex with Fragment 14 (pdb code 4y4u). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Endothiapepsin in Complex with Fragment 14, PDB code: 4y4u:

Bromine binding site 1 out of 1 in 4y4u

Go back to Bromine Binding Sites List in 4y4u
Bromine binding site 1 out of 1 in the Endothiapepsin in Complex with Fragment 14


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Endothiapepsin in Complex with Fragment 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br404

b:46.0
occ:0.68
BR A:46V404 0.0 46.0 0.7
C5 A:46V404 1.9 20.6 0.7
C4 A:46V404 2.8 20.3 0.7
C6 A:46V404 2.8 24.7 0.7
OD2 A:ASP15 4.0 19.8 1.0
CD1 A:ILE10 4.1 16.6 1.0
O A:HOH876 4.1 46.1 1.0
OD2 A:ASP11 4.1 20.1 1.0
CB A:ASP15 4.1 16.2 1.0
C7 A:46V404 4.1 26.2 0.7
C3 A:46V404 4.1 23.1 0.7
O A:HOH901 4.2 38.7 1.0
CG A:ASP15 4.3 22.8 1.0
O A:HOH714 4.3 34.5 1.0
OD2 A:ASP119 4.3 34.4 1.0
C2 A:46V404 4.7 25.4 0.7
CG A:ASP119 4.8 32.8 1.0

Reference:

N.Radeva, A.Heine, G.Klebe. Crystallographic Fragment Screening of An Entire Library To Be Published.
Page generated: Wed Jul 10 23:04:17 2024

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