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Bromine in PDB 5fks: Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase

Enzymatic activity of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase

All present enzymatic activity of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase:
3.2.1.151;

Protein crystallography data

The structure of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase, PDB code: 5fks was solved by M.Attia, J.Stepper, G.J.Davies, H.Brumer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.14 / 1.99
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.360, 127.690, 73.280, 90.00, 90.00, 90.00
R / Rfree (%) 16.774 / 21.277

Other elements in 5fks:

The structure of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase also contains other interesting chemical elements:

Potassium (K) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase (pdb code 5fks). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase, PDB code: 5fks:

Bromine binding site 1 out of 1 in 5fks

Go back to Bromine Binding Sites List in 5fks
Bromine binding site 1 out of 1 in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1767

b:27.6
occ:1.00
 N A:TRP353 3.3 15.7 1.0
K A:K1785 3.7 22.0 1.0
C5 A:BGC1774 3.7 27.6 1.0
CD2 A:TYR329 3.8 16.6 1.0
O5 A:BGC1774 3.9 29.3 1.0
CB A:TRP353 3.9 17.0 1.0
N A:TRP354 3.9 15.6 1.0
CA A:ALA352 4.0 17.5 1.0
C1 A:BGC1774 4.0 30.6 1.0
CA A:TRP353 4.0 16.6 1.0
CE2 A:TYR329 4.1 16.0 1.0
C A:ALA352 4.1 18.5 1.0
O A:ILE351 4.2 15.1 1.0
C6 A:BGC1774 4.2 23.6 1.0
CD1 A:TRP353 4.3 17.6 1.0
O A:HOH2465 4.4 30.9 1.0
CG A:TRP353 4.5 17.5 1.0
C A:TRP353 4.5 16.0 1.0
CB A:TRP354 4.6 15.5 1.0
O A:TYR329 4.7 17.0 1.0
O1 A:BGC1774 4.7 32.9 1.0
O A:TRP354 4.7 18.4 1.0
CA A:TRP354 4.8 15.8 1.0
CB A:ALA352 4.8 16.4 1.0
C A:ILE351 4.9 17.0 1.0
N A:ALA352 4.9 16.4 1.0
C4 A:BGC1774 5.0 26.9 1.0

Reference:

M.Attia, J.Stepper, G.J.Davies, H.Brumer. Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase From the Soil Saprophyte Cellvibrio Japonicus Unravels the First Step of Xyloglucan Degradation. Febs J. V. 283 1701 2016.
ISSN: ISSN 1742-464X
PubMed: 26929175
DOI: 10.1111/FEBS.13696
Page generated: Mon Jul 7 08:15:29 2025

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