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Bromine in PDB 5g2a: The Crystal Structure of Light-Driven Chloride Pump Clr at pH 6.0 with Bromide Ion.

Protein crystallography data

The structure of The Crystal Structure of Light-Driven Chloride Pump Clr at pH 6.0 with Bromide Ion., PDB code: 5g2a was solved by K.L.Kim, S.K.Kwon, S.H.Jun, J.S.Cha, H.Y.Kim, J.H.Kim, H.S.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.13 / 2.17
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 102.774, 48.850, 69.363, 90.00, 110.13, 90.00
R / Rfree (%) 15.3 / 20.7

Bromine Binding Sites:

The binding sites of Bromine atom in the The Crystal Structure of Light-Driven Chloride Pump Clr at pH 6.0 with Bromide Ion. (pdb code 5g2a). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the The Crystal Structure of Light-Driven Chloride Pump Clr at pH 6.0 with Bromide Ion., PDB code: 5g2a:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 5g2a

Go back to Bromine Binding Sites List in 5g2a
Bromine binding site 1 out of 2 in the The Crystal Structure of Light-Driven Chloride Pump Clr at pH 6.0 with Bromide Ion.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of The Crystal Structure of Light-Driven Chloride Pump Clr at pH 6.0 with Bromide Ion. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1266

b:58.3
occ:1.00
ND2 A:ASN98 3.3 37.6 1.0
CE A:LYS235 3.4 30.4 1.0
OG1 A:THR102 3.4 31.2 1.0
O A:HOH2036 3.6 23.6 1.0
NZ A:LYS235 3.7 36.6 1.0
CD1 A:TRP99 3.7 19.6 1.0
CG2 A:THR102 3.7 26.1 1.0
NE1 A:TRP99 3.9 17.0 1.0
CA A:ALA61 4.1 26.3 1.0
CB A:THR102 4.1 25.4 1.0
CB A:ALA61 4.1 24.3 1.0
CG A:ASN98 4.2 31.5 1.0
CB A:ASN98 4.2 27.2 1.0
C15 A:RET1268 4.4 33.1 1.0
C14 A:RET1268 4.6 24.9 1.0
CD A:LYS235 4.6 31.4 1.0
N A:ALA61 4.6 25.2 1.0
C A:ASN98 4.8 20.2 1.0
N A:TRP99 4.8 18.9 1.0
O A:ASN98 4.9 18.4 1.0
CG A:TRP99 5.0 17.1 1.0

Bromine binding site 2 out of 2 in 5g2a

Go back to Bromine Binding Sites List in 5g2a
Bromine binding site 2 out of 2 in the The Crystal Structure of Light-Driven Chloride Pump Clr at pH 6.0 with Bromide Ion.


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of The Crystal Structure of Light-Driven Chloride Pump Clr at pH 6.0 with Bromide Ion. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1267

b:77.4
occ:1.00
CB A:LYS46 3.3 40.9 1.0
N A:LYS46 3.4 25.3 1.0
CD A:PRO45 3.6 29.2 1.0
N A:PRO45 3.8 28.8 1.0
CG A:PRO45 3.9 28.3 1.0
CB A:PRO45 4.0 28.6 1.0
CA A:LYS46 4.0 33.0 1.0
CB A:ALA44 4.0 28.8 1.0
CD A:LYS46 4.3 52.6 1.0
CA A:PRO45 4.3 28.8 1.0
C A:PRO45 4.3 24.8 1.0
CG A:LYS46 4.4 51.0 1.0
C A:ALA44 4.4 28.8 1.0
CA A:ALA44 4.8 27.7 1.0

Reference:

K.Kim, S.Kwon, S.Jun, J.S.Cha, H.Kim, W.Lee, J.F.Kim, H.Cho. Crystal Structure and Functional Characterization of A Light-Driven Chloride Pump Having An Ntq Motif. Nat.Commun. V. 7 12677 2016.
ISSN: ESSN 2041-1723
PubMed: 27554809
DOI: 10.1038/NCOMMS12677
Page generated: Mon Jul 7 08:18:37 2025

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