Atomistry » Bromine » PDB 5l4h-5mqe » 5m65
Atomistry »
  Bromine »
    PDB 5l4h-5mqe »
      5m65 »

Bromine in PDB 5m65: Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine

Enzymatic activity of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine

All present enzymatic activity of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine:
3.3.1.1;

Protein crystallography data

The structure of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine, PDB code: 5m65 was solved by T.Manszewski, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.87 / 1.95
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 100.665, 103.051, 90.654, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21.3

Other elements in 5m65:

The structure of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine (pdb code 5m65). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine, PDB code: 5m65:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 5m65

Go back to Bromine Binding Sites List in 5m65
Bromine binding site 1 out of 2 in the Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br504

b:49.3
occ:1.00
 OD2 A:ASP371 3.5 37.2 1.0
CG A:ASP371 3.7 39.2 1.0
CE1 A:HIS373 4.0 31.6 1.0
CD A:PRO370 4.0 34.2 1.0
OD1 A:ASP371 4.1 36.3 1.0
CB A:PHE369 4.1 27.6 1.0
N A:ASP371 4.2 32.9 1.0
O A:HOH648 4.2 40.3 1.0
CD2 A:PHE369 4.3 31.9 1.0
CG A:PRO370 4.3 34.4 1.0
N A:PRO370 4.4 37.6 1.0
CB A:ASP371 4.4 38.2 1.0
ND1 A:HIS373 4.4 25.4 1.0
CB A:ARG329 4.4 33.9 1.0
O A:ARG329 4.5 25.1 1.0
CD A:ARG329 4.5 35.5 1.0
CB A:PRO370 4.6 32.6 1.0
CG A:ARG329 4.6 36.8 1.0
CG A:PHE369 4.6 30.6 1.0
CA A:ARG329 4.8 29.9 1.0
CA A:PRO370 4.9 39.2 1.0
CA A:ASP371 4.9 34.2 1.0
C A:PHE369 5.0 36.3 1.0

Bromine binding site 2 out of 2 in 5m65

Go back to Bromine Binding Sites List in 5m65
Bromine binding site 2 out of 2 in the Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of S-Adenosyl-L-Homocysteine Hydrolase From Bradyrhizobium Elkanii in Complex with Adenine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br504

b:29.7
occ:1.00
 CG B:ASP371 3.5 41.3 1.0
OD2 B:ASP371 3.6 40.6 1.0
OD1 B:ASP371 3.7 32.0 1.0
CB B:ASP371 4.1 35.0 1.0
N B:ASP371 4.2 44.0 1.0
CB B:ARG329 4.2 33.5 1.0
CE1 B:HIS373 4.3 38.7 1.0
O B:ARG329 4.4 34.0 1.0
CG B:ARG329 4.4 39.9 1.0
CD B:ARG329 4.5 41.9 1.0
CD B:PRO370 4.6 40.0 1.0
ND1 B:HIS373 4.6 37.9 1.0
CB B:PHE369 4.6 34.3 1.0
CA B:ARG329 4.7 29.4 1.0
CD2 B:PHE369 4.7 29.5 1.0
CA B:ASP371 4.8 35.7 1.0
N B:PRO370 4.8 39.6 1.0
CB B:PRO370 4.9 40.1 1.0
C B:ARG329 5.0 31.3 1.0

Reference:

T.Manszewski, K.Szpotkowski, M.Jaskolski. Crystallographic and Saxs Studies Ofs-Adenosyl-L-Homocysteine Hydrolase Frombradyrhizobium Elkanii. Iucrj V. 4 271 2017.
ISSN: ESSN 2052-2525
PubMed: 28512574
DOI: 10.1107/S2052252517002433
Page generated: Thu Jul 11 00:16:24 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy