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Bromine in PDB 5ryd: INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z955369596

Enzymatic activity of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z955369596

All present enzymatic activity of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z955369596:
3.1.3.36; 3.1.3.56; 3.1.3.86;

Protein crystallography data

The structure of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z955369596, PDB code: 5ryd was solved by W.J.Bradshaw, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.06 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.380, 79.240, 89.220, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.3

Bromine Binding Sites:

The binding sites of Bromine atom in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z955369596 (pdb code 5ryd). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z955369596, PDB code: 5ryd:

Bromine binding site 1 out of 1 in 5ryd

Go back to Bromine Binding Sites List in 5ryd
Bromine binding site 1 out of 1 in the INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z955369596


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of INPP5D Pandda Analysis Group Deposition -- Crystal Structure of the Phosphatase and C2 Domains of SHIP1 in Complex with Z955369596 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br901

b:20.0
occ:0.84
 BR7 A:WKV901 0.0 20.0 0.8
C06 A:WKV901 1.9 18.3 0.8
C05 A:WKV901 2.8 18.9 0.8
C08 A:WKV901 2.9 19.1 0.8
CB A:LYS477 3.7 18.4 1.0
CG2 A:VAL479 3.8 14.1 1.0
O A:THR478 4.1 15.9 1.0
CA A:GLU498 4.1 20.3 1.0
C04 A:WKV901 4.2 19.1 0.8
C09 A:WKV901 4.2 19.1 0.8
CG A:GLU498 4.2 24.8 1.0
CA A:VAL479 4.2 14.5 1.0
CB A:GLU498 4.3 21.9 1.0
C A:THR478 4.4 16.4 1.0
N A:VAL479 4.4 15.5 1.0
CG A:LYS477 4.5 20.0 1.0
CB A:VAL479 4.6 14.7 1.0
O A:GLU498 4.6 21.4 1.0
C A:LYS477 4.7 17.4 1.0
CD1 A:ILE501 4.7 18.1 1.0
C03 A:WKV901 4.7 19.2 0.8
O A:LYS477 4.8 16.2 1.0
CA A:LYS477 4.8 17.4 1.0
N A:THR478 4.9 16.1 1.0
C A:GLU498 4.9 21.0 1.0
CB A:ALA493 4.9 16.8 1.0
N A:GLU498 5.0 19.8 1.0
CD A:GLU498 5.0 25.1 1.0

Reference:

W.J.Bradshaw, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi. INPP5D Pandda Analysis Group Deposition To Be Published.
Page generated: Mon Jul 7 09:05:06 2025

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