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Bromine in PDB 6h11: Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028

Protein crystallography data

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028, PDB code: 6h11 was solved by P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.20 / 1.52
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 71.928, 71.928, 151.178, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 22.2

Other elements in 6h11:

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028 also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Zinc (Zn) 1 atom
Chlorine (Cl) 1 atom

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028 (pdb code 6h11). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028, PDB code: 6h11:

Bromine binding site 1 out of 1 in 6h11

Go back to Bromine Binding Sites List in 6h11
Bromine binding site 1 out of 1 in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br409

b:45.2
occ:1.00
BR A:FHT409 0.0 45.2 1.0
CAQ A:FHT409 1.9 34.8 1.0
CAP A:FHT409 2.8 31.3 1.0
CAR A:FHT409 2.8 31.4 1.0
HAP A:FHT409 2.9 37.5 1.0
HAR A:FHT409 2.9 37.7 1.0
HD1 A:HIS90 2.9 28.3 1.0
HE1 A:HIS90 3.0 27.9 1.0
O A:HOH711 3.1 40.9 1.0
ND1 A:HIS90 3.5 23.6 1.0
CE1 A:HIS90 3.6 23.2 1.0
HD13 A:LEU75 3.7 22.4 1.0
HD11 A:LEU75 3.9 22.4 1.0
O A:HOH761 3.9 30.9 1.0
CAO A:FHT409 4.0 28.1 1.0
O A:HOH667 4.0 24.9 0.5
CAS A:FHT409 4.1 27.6 1.0
CD1 A:LEU75 4.2 18.7 1.0
HD12 A:LEU75 4.2 22.4 1.0
OD2 A:ASP139 4.4 23.4 1.0
HB3 A:ALA138 4.5 20.0 1.0
CAN A:FHT409 4.6 25.7 1.0
HE2 A:TYR136 4.8 23.0 1.0
CG A:HIS90 4.9 20.0 1.0
HAO A:FHT409 4.9 33.7 1.0
NE2 A:HIS90 4.9 21.6 1.0
O A:HOH784 4.9 23.9 0.6
HAS A:FHT409 5.0 33.2 1.0
HE3 A:LYS245 5.0 29.1 1.0

Reference:

P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link. Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand AA028 To Be Published.
Page generated: Mon Jul 7 09:58:54 2025

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