Atomistry » Bromine » PDB 6lue-6puu » 6oga
Atomistry »
  Bromine »
    PDB 6lue-6puu »
      6oga »

Bromine in PDB 6oga: Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51)

Protein crystallography data

The structure of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51), PDB code: 6oga was solved by C.-Y.Lin, S.G.Boxer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.30 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.600, 68.600, 61.450, 90.00, 99.82, 90.00
R / Rfree (%) 16.1 / 18.6

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51) (pdb code 6oga). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51), PDB code: 6oga:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 6oga

Go back to Bromine Binding Sites List in 6oga
Bromine binding site 1 out of 2 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br15

b:23.9
occ:1.00
BR A:B2C15 0.0 23.9 1.0
CE1 A:B2C15 1.9 18.5 1.0
CD1 A:B2C15 2.8 18.6 1.0
CZ A:B2C15 2.9 19.6 1.0
OG1 A:THR155 2.9 21.1 1.0
OH A:B2C15 3.1 21.3 1.0
CD A:GLU172 3.5 25.8 1.0
OE1 A:GLU172 3.7 25.4 1.0
CE2 A:PHE95 3.7 23.7 1.0
O A:HOH444 3.7 15.8 1.0
OE2 A:GLU172 3.8 28.1 1.0
CG A:GLU172 3.8 30.2 1.0
CB A:THR153 3.8 20.0 1.0
OG1 A:THR153 3.9 16.1 1.0
CD2 A:PHE95 4.0 22.0 1.0
CG1 A:VAL11 4.2 18.5 1.0
CG2 A:B2C15 4.2 17.5 1.0
CB A:THR155 4.2 16.5 1.0
CE2 A:B2C15 4.2 19.8 1.0
CG2 A:THR153 4.4 18.9 1.0
CG2 A:THR155 4.6 18.9 1.0
CZ A:PHE95 4.7 18.4 1.0
CD2 A:B2C15 4.7 18.7 1.0
OG1 A:B2C15 4.8 20.2 1.0
CB A:GLU172 5.0 23.4 1.0

Bromine binding site 2 out of 2 in 6oga

Go back to Bromine Binding Sites List in 6oga
Bromine binding site 2 out of 2 in the Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3- BR1Y), H148D; Circular Permutant (50-51) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br15

b:25.7
occ:1.00
BR B:B2C15 0.0 25.7 1.0
CE1 B:B2C15 1.9 18.2 1.0
CD1 B:B2C15 2.8 21.9 1.0
CZ B:B2C15 2.9 20.3 1.0
OG1 B:THR155 2.9 22.8 1.0
OH B:B2C15 3.0 22.5 1.0
CD B:GLU172 3.5 28.3 1.0
OE1 B:GLU172 3.7 29.1 1.0
CE2 B:PHE95 3.7 20.8 1.0
O B:HOH450 3.7 19.2 1.0
OE2 B:GLU172 3.7 30.1 1.0
CB B:THR153 3.8 21.7 1.0
OG1 B:THR153 3.8 21.3 1.0
CG B:GLU172 3.9 32.3 1.0
CD2 B:PHE95 4.0 21.4 1.0
CB B:THR155 4.2 21.6 1.0
CG2 B:B2C15 4.2 22.9 1.0
CE2 B:B2C15 4.2 18.1 1.0
CG1 B:VAL11 4.3 17.8 1.0
CG2 B:THR153 4.3 22.3 1.0
CG2 B:THR155 4.6 21.2 1.0
CZ B:PHE95 4.6 22.3 1.0
CD2 B:B2C15 4.7 18.9 1.0
O B:HOH406 4.9 39.7 1.0
OG1 B:B2C15 4.9 22.9 1.0

Reference:

C.-Y.Lin, A.Deng, S.G.Boxer. Crystal Structure of Green Fluorescent Protein (Gfp); S65T, Y66(3-BR1Y), H148D; Circular Permutant (50-51) To Be Published.
Page generated: Mon Jul 7 10:11:02 2025

Last articles

Na in 1VQ7
Na in 1VQ5
Na in 1VQ6
Na in 1VQ4
Na in 1VI6
Na in 1VKG
Na in 1VMJ
Na in 1VMH
Na in 1VMF
Na in 1VLM
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy