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Bromine in PDB 6xds: Crystal Structure of Mbp-TREM2 Ig Domain Fusion with Fragment, 2-((4- Bromophenyl)Amino)Ethan-1-Ol

Protein crystallography data

The structure of Crystal Structure of Mbp-TREM2 Ig Domain Fusion with Fragment, 2-((4- Bromophenyl)Amino)Ethan-1-Ol, PDB code: 6xds was solved by H.P.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.44 / 1.47
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.84, 80.35, 103.89, 90, 90, 90
R / Rfree (%) 18.8 / 20.8

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Mbp-TREM2 Ig Domain Fusion with Fragment, 2-((4- Bromophenyl)Amino)Ethan-1-Ol (pdb code 6xds). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Crystal Structure of Mbp-TREM2 Ig Domain Fusion with Fragment, 2-((4- Bromophenyl)Amino)Ethan-1-Ol, PDB code: 6xds:

Bromine binding site 1 out of 1 in 6xds

Go back to Bromine Binding Sites List in 6xds
Bromine binding site 1 out of 1 in the Crystal Structure of Mbp-TREM2 Ig Domain Fusion with Fragment, 2-((4- Bromophenyl)Amino)Ethan-1-Ol


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Mbp-TREM2 Ig Domain Fusion with Fragment, 2-((4- Bromophenyl)Amino)Ethan-1-Ol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br501

b:22.2
occ:0.55
BR A:V5S501 0.0 22.2 0.6
C5 A:V5S501 1.9 19.5 0.8
C4 A:V5S501 2.9 17.8 0.8
C6 A:V5S501 2.9 19.6 0.8
H7 A:V5S501 3.0 21.4 0.8
H8 A:V5S501 3.0 23.5 0.8
NE A:ARG354 3.7 23.0 1.0
H21 A:DMS503 3.7 39.0 1.0
CZ A:ARG354 3.8 22.6 1.0
O A:HOH1075 3.8 30.7 1.0
CD A:ARG354 3.9 22.9 1.0
NH1 A:ARG354 4.1 22.8 1.0
C3 A:V5S501 4.2 17.3 0.8
C7 A:V5S501 4.2 18.8 0.8
NH2 A:ARG354 4.2 19.5 1.0
O A:HOH661 4.2 46.5 1.0
O A:HOH834 4.4 35.0 1.0
CG A:MET391 4.6 18.7 1.0
C2 A:V5S501 4.7 18.2 0.8
C2 A:DMS503 4.7 32.5 1.0
H22 A:DMS503 4.9 39.0 1.0
H6 A:V5S501 5.0 20.7 0.8
H9 A:V5S501 5.0 22.5 0.8

Reference:

N.J.Byrne, A.C.Lee, J.Kostas, J.C.Reid, A.T.Partridge, S.S.So, J.E.Cowan, P.Abeywickrema, H.Huang, M.Zebisch, J.J.Barker, S.M.Soisson, A.Brooun, H.P.Su. Development of A Robust Crystallization Platform For Immune Receptor TREM2 Using A Crystallization Chaperone Strategy. Protein Expr.Purif. V. 179 05796 2021.
ISSN: ESSN 1096-0279
PubMed: 33221505
DOI: 10.1016/J.PEP.2020.105796
Page generated: Thu Jul 11 03:05:47 2024

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