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Bromine in PDB 7gpy: Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Ncl-00024667

Enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Ncl-00024667

All present enzymatic activity of Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Ncl-00024667:
3.4.22.28;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Ncl-00024667, PDB code: 7gpy was solved by R.M.Lithgo, M.Fairhead, L.Koekemoer, J.C.Aschenbrenner, B.H.Balcomb, A.S.Godoy, P.G.Marples, X.Ni, C.W.E.Tomlinson, W.Thompson, C.Wild, D.Fearon, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 73.86 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.69, 62.786, 147.71, 90, 90, 90
R / Rfree (%) 19 / 21

Bromine Binding Sites:

The binding sites of Bromine atom in the Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Ncl-00024667 (pdb code 7gpy). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Ncl-00024667, PDB code: 7gpy:

Bromine binding site 1 out of 1 in 7gpy

Go back to Bromine Binding Sites List in 7gpy
Bromine binding site 1 out of 1 in the Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Ncl-00024667


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Enterovirus D68 3C Protease in Complex with Ncl-00024667 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br201

b:45.3
occ:0.44
 BR1 B:IT4201 0.0 45.3 0.4
C5 B:IT4201 1.9 43.7 0.4
O A:HOH273 2.6 29.9 0.4
C6 B:IT4201 2.8 44.8 0.4
C4 B:IT4201 2.8 44.2 0.4
N A:PRO2 3.7 29.1 1.0
NZ B:LYS108 3.7 51.5 1.0
C A:GLY1 3.8 26.3 1.0
CA A:PRO2 3.9 27.3 1.0
O A:GLY1 4.1 22.8 1.0
C7 B:IT4201 4.1 43.5 0.4
C3 B:IT4201 4.1 44.3 0.4
CD A:PRO2 4.1 33.8 1.0
CZ B:PHE109 4.2 29.1 1.0
CA A:GLY1 4.2 26.5 1.0
CB A:ASP5 4.3 26.3 1.0
CD B:LYS108 4.3 43.3 1.0
CE B:LYS108 4.4 45.6 1.0
CB A:PRO2 4.4 32.2 1.0
CG A:ASP5 4.6 35.1 1.0
OD2 A:ASP5 4.6 50.8 1.0
C2 B:IT4201 4.7 43.9 0.4
CG A:PRO2 4.7 37.9 1.0
CE2 B:PHE109 4.8 30.1 1.0
N A:GLY1 4.9 24.5 1.0

Reference:

R.M.Lithgo, M.Fairhead, L.Koekemoer, J.C.Aschenbrenner, B.H.Balcomb, A.S.Godoy, P.G.Marples, X.Ni, C.W.E.Tomlinson, W.Thompson, C.Wild, D.Fearon, M.A.Walsh, F.Von Delft. Pandda Analysis Group Deposition To Be Published.
Page generated: Mon Jul 7 11:20:24 2025

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