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Bromine in PDB 7o1h: Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues

Bromine Binding Sites:

The binding sites of Bromine atom in the Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues (pdb code 7o1h). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues, PDB code: 7o1h:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 7o1h

Go back to Bromine Binding Sites List in 7o1h
Bromine binding site 1 out of 2 in the Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br26

b:0.0
occ:1.00
BR A:BGM26 0.0 0.0 1.0
C8 A:BGM26 1.9 0.0 1.0
N7 A:BGM26 2.8 0.0 1.0
H1' A:BGM26 2.8 0.0 1.0
N9 A:BGM26 2.9 0.0 1.0
H2 A:DA15 3.3 0.0 1.0
O4' A:DG27 3.4 0.0 1.0
C1' A:BGM26 3.4 0.0 1.0
H21 A:DG14 3.6 0.0 1.0
C2 A:DA15 3.8 0.0 1.0
H5' A:DG27 3.8 0.0 1.0
H22 A:DG14 3.8 0.0 1.0
C5 A:BGM26 4.0 0.0 1.0
N3 A:DA15 4.0 0.0 1.0
C4 A:BGM26 4.0 0.0 1.0
N2 A:DG14 4.1 0.0 1.0
C1' A:DG27 4.3 0.0 1.0
O4' A:BGM26 4.3 0.0 1.0
H4' A:DG27 4.3 0.0 1.0
C4' A:DG27 4.3 0.0 1.0
N9 A:DG27 4.3 0.0 1.0
H1' A:DG27 4.4 0.0 1.0
N1 A:DA15 4.5 0.0 1.0
H2' A:BGM26 4.6 0.0 1.0
C5' A:DG27 4.6 0.0 1.0
C4 A:DG27 4.6 0.0 1.0
C2' A:BGM26 4.6 0.0 1.0
N3 A:DG27 4.8 0.0 1.0
O2 A:DT25 4.8 0.0 1.0
C8 A:DG27 4.8 0.0 1.0
H4' A:BGM26 5.0 0.0 1.0

Bromine binding site 2 out of 2 in 7o1h

Go back to Bromine Binding Sites List in 7o1h
Bromine binding site 2 out of 2 in the Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Hybrid-2R Quadruplex-Duplex with (-P-P-L) Topology and 3 Syn Residues within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br28

b:0.0
occ:1.00
BR A:BGM28 0.0 0.0 1.0
C8 A:BGM28 1.9 0.0 1.0
N7 A:BGM28 2.8 0.0 1.0
N9 A:BGM28 2.9 0.0 1.0
H1' A:BGM28 2.9 0.0 1.0
H62 A:DA31 3.0 0.0 1.0
C1' A:BGM28 3.4 0.0 1.0
N6 A:DA31 3.6 0.0 1.0
H2' A:BGM28 3.6 0.0 1.0
H21 A:DG12 3.7 0.0 1.0
H2' A:DT29 3.7 0.0 1.0
H2'' A:DT29 3.8 0.0 1.0
C6 A:DT29 3.8 0.0 1.0
C5 A:DT29 3.8 0.0 1.0
N1 A:DT29 3.9 0.0 1.0
C4 A:DT29 3.9 0.0 1.0
H22 A:DG12 3.9 0.0 1.0
N3 A:DT29 3.9 0.0 1.0
C5 A:BGM28 3.9 0.0 1.0
C2 A:DT29 4.0 0.0 1.0
C2' A:BGM28 4.0 0.0 1.0
H8 A:DA30 4.0 0.0 1.0
C4 A:BGM28 4.0 0.0 1.0
N7 A:DA31 4.1 0.0 1.0
H61 A:DA31 4.1 0.0 1.0
C2' A:DT29 4.2 0.0 1.0
N2 A:DG12 4.2 0.0 1.0
H22 A:DG13 4.2 0.0 1.0
H2'' A:BGM28 4.2 0.0 1.0
H72 A:DT29 4.2 0.0 1.0
C6 A:DA31 4.2 0.0 1.0
H6 A:DT29 4.3 0.0 1.0
H61 A:DA3 4.3 0.0 1.0
C5 A:DA31 4.4 0.0 1.0
C8 A:DA30 4.4 0.0 1.0
H3 A:DT29 4.4 0.0 1.0
N7 A:DA30 4.5 0.0 1.0
O4 A:DT29 4.5 0.0 1.0
O2 A:DT29 4.6 0.0 1.0
H62 A:DA3 4.6 0.0 1.0
C7 A:DT29 4.6 0.0 1.0
N2 A:DG13 4.6 0.0 1.0
N6 A:DA3 4.6 0.0 1.0
C1' A:DT29 4.6 0.0 1.0
O4' A:BGM28 4.7 0.0 1.0
H21 A:DG13 5.0 0.0 1.0

Reference:

S.Mohr, J.Jana, Y.M.Vianney, K.Weisz. Expanding the Topological Landscape By A G-Column Flip of A Parallel G-Quadruplex. Chemistry 2021.
ISSN: ISSN 0947-6539
PubMed: 33955615
DOI: 10.1002/CHEM.202101181
Page generated: Mon Jul 7 11:31:36 2025

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