Bromine in PDB 7pm3: Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER)

The structure of Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER) also contains other interesting chemical elements:

Magnesium

(Mg)

3 atoms

The binding sites of Bromine atom in the Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER) (pdb code 7pm3). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 3 binding sites of Bromine where determined in the Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER), PDB code: 7pm3:
Jump to Bromine binding site number: 1; 2; 3;

Bromine binding site 1 out of 3 in the Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER) within 5.0Å range: probe atom residue distance (Å) B Occ C:Br401 b:62.0 occ:1.00 BR C:9UE401 0.0 62.0 1.0 C28 C:9UE401 1.9 62.0 1.0 N3 C:9UE401 2.8 62.0 1.0 C21 C:9UE401 3.0 62.0 1.0 CD2 B:HIC73 3.3 59.0 1.0 C19 C:9UE401 3.3 62.0 1.0 OD2 B:ASP179 3.4 57.5 1.0 C20 C:9UE401 3.6 62.0 1.0 CG B:HIC73 3.8 59.0 1.0 NE2 B:HIC73 3.9 59.0 1.0 C27 C:9UE401 4.0 62.0 1.0 N1 C:9UE401 4.0 62.0 1.0 CG B:ASP179 4.1 57.5 1.0 C22 C:9UE401 4.1 62.0 1.0 CB B:HIC73 4.2 59.0 1.0 C8 C:9UE401 4.4 62.0 1.0 CZ B:HIC73 4.4 59.0 1.0 OD1 B:ASP179 4.5 57.5 1.0 C18 C:9UE401 4.6 62.0 1.0 ND1 B:HIC73 4.6 59.0 1.0 CE1 B:HIC73 4.6 59.0 1.0 C9 C:9UE401 4.8 62.0 1.0 CB B:ASP179 4.9 57.5 1.0

Bromine binding site 2 out of 3 in the Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER) within 5.0Å range: probe atom residue distance (Å) B Occ D:Br401 b:60.8 occ:1.00 BR D:9UE401 0.0 60.8 1.0 C28 D:9UE401 1.9 60.8 1.0 N3 D:9UE401 2.8 60.8 1.0 C21 D:9UE401 3.0 60.8 1.0 CD2 C:HIC73 3.3 56.5 1.0 C19 D:9UE401 3.3 60.8 1.0 OD2 C:ASP179 3.5 56.3 1.0 C20 D:9UE401 3.6 60.8 1.0 CG C:HIC73 3.6 56.5 1.0 NE2 C:HIC73 3.9 56.5 1.0 N1 D:9UE401 4.0 60.8 1.0 CB C:HIC73 4.0 56.5 1.0 C27 D:9UE401 4.0 60.8 1.0 C22 D:9UE401 4.1 60.8 1.0 CG C:ASP179 4.1 56.3 1.0 C8 D:9UE401 4.4 60.8 1.0 ND1 C:HIC73 4.4 56.5 1.0 CZ C:HIC73 4.4 56.5 1.0 CE1 C:HIC73 4.5 56.5 1.0 C18 D:9UE401 4.5 60.8 1.0 OD1 C:ASP179 4.6 56.3 1.0 C9 D:9UE401 4.8 60.8 1.0 CB C:ASP179 5.0 56.3 1.0

Bromine binding site 3 out of 3 in the Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER)


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Cryo-Em Structure of Young Jasp-Stabilized F-Actin (Central 3ER) within 5.0Å range: probe atom residue distance (Å) B Occ D:Br405 b:76.0 occ:1.00 BR D:9UE405 0.0 76.0 1.0 C28 D:9UE405 1.9 76.0 1.0 N3 D:9UE405 2.8 76.0 1.0 C21 D:9UE405 2.9 76.0 1.0 CD2 D:HIC73 3.3 64.2 1.0 C19 D:9UE405 3.4 76.0 1.0 OD2 D:ASP179 3.4 63.3 1.0 C20 D:9UE405 3.6 76.0 1.0 CG D:HIC73 3.7 64.2 1.0 CB D:HIC73 3.9 64.2 1.0 C27 D:9UE405 4.0 76.0 1.0 NE2 D:HIC73 4.0 64.2 1.0 N1 D:9UE405 4.0 76.0 1.0 C22 D:9UE405 4.1 76.0 1.0 CG D:ASP179 4.1 63.3 1.0 C8 D:9UE405 4.4 76.0 1.0 OD1 D:ASP179 4.5 63.3 1.0 ND1 D:HIC73 4.5 64.2 1.0 CZ D:HIC73 4.6 64.2 1.0 C18 D:9UE405 4.6 76.0 1.0 CE1 D:HIC73 4.7 64.2 1.0 C9 D:9UE405 4.9 76.0 1.0 CD1 D:ILE75 4.9 64.4 1.0 CB D:ASP179 5.0 63.3 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724