Bromine in PDB 8s1w: Structure of A Quadruplex-Duplex Hybrid with A (-Pd+L) Loop Progression

The binding sites of Bromine atom in the Structure of A Quadruplex-Duplex Hybrid with A (-Pd+L) Loop Progression (pdb code 8s1w). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Structure of A Quadruplex-Duplex Hybrid with A (-Pd+L) Loop Progression, PDB code: 8s1w:

Bromine binding site 1 out of 1 in the Structure of A Quadruplex-Duplex Hybrid with A (-Pd+L) Loop Progression


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of A Quadruplex-Duplex Hybrid with A (-Pd+L) Loop Progression within 5.0Å range: probe atom residue distance (Å) B Occ A:Br26 b:0.0 occ:1.00 BR A:BGM26 0.0 0.0 1.0 C8 A:BGM26 1.9 0.0 1.0 N7 A:BGM26 2.8 0.0 1.0 H1' A:BGM26 2.8 0.0 1.0 N9 A:BGM26 2.9 0.0 1.0 C1' A:BGM26 3.4 0.0 1.0 H21 A:DG32 3.5 0.0 1.0 H22 A:DG32 3.9 0.0 1.0 O4' A:DG27 3.9 0.0 1.0 C5 A:BGM26 3.9 0.0 1.0 C4 A:BGM26 4.0 0.0 1.0 N2 A:DG32 4.1 0.0 1.0 H2' A:BGM26 4.2 0.0 1.0 H22 A:DG33 4.2 0.0 1.0 H5' A:DG27 4.3 0.0 1.0 C2' A:BGM26 4.4 0.0 1.0 N2 A:DG33 4.5 0.0 1.0 O4' A:BGM26 4.5 0.0 1.0 N9 A:DG27 4.6 0.0 1.0 C4 A:DG27 4.7 0.0 1.0 H21 A:DG33 4.7 0.0 1.0 C1' A:DG27 4.8 0.0 1.0 N3 A:DG27 4.8 0.0 1.0 C4' A:DG27 4.9 0.0 1.0 H4' A:DG27 4.9 0.0 1.0 C2 A:DG33 4.9 0.0 1.0

Y.M.Vianney, J.Jana, K.Weisz. A pH-Responsive Topological Switch Based on A Dna Quadruplex-Duplex Hybrid. Chemistry 00722 2024.
ISSN: ISSN 0947-6539
PubMed: 38497675
DOI: 10.1002/CHEM.202400722