Atomistry » Bromine » PDB 9dzm-9hh2 » 9hh2
Atomistry »
  Bromine »
    PDB 9dzm-9hh2 »
      9hh2 »

Bromine in PDB 9hh2: Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose

Protein crystallography data

The structure of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose, PDB code: 9hh2 was solved by A.Chevenier, M.Czjzek, G.Michel, E.Ficko-Blean, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.63 / 1.58
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.63, 96.19, 106.65, 90, 90, 90
R / Rfree (%) 15.2 / 17.7

Other elements in 9hh2:

The structure of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Chlorine (Cl) 9 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose (pdb code 9hh2). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 6 binding sites of Bromine where determined in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose, PDB code: 9hh2:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6;

Bromine binding site 1 out of 6 in 9hh2

Go back to Bromine Binding Sites List in 9hh2
Bromine binding site 1 out of 6 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br602

b:24.2
occ:0.84
O A:HOH855 3.2 33.9 1.0
NE A:ARG169 3.3 21.5 1.0
N A:TYR138 3.4 21.0 1.0
NZ A:LYS141 3.5 36.2 1.0
NH2 A:ARG169 3.8 22.0 1.0
CA A:ARG169 3.8 24.0 1.0
CE A:LYS141 3.8 37.8 1.0
CA A:THR137 3.9 21.1 1.0
CB A:LYS141 3.9 21.1 1.0
CZ A:ARG169 4.0 18.7 1.0
CB A:TYR138 4.0 18.6 1.0
CB A:ARG169 4.0 22.8 1.0
O A:HOH1052 4.1 47.1 1.0
CD A:ARG169 4.1 29.0 1.0
C A:ARG169 4.1 23.2 1.0
CG A:TYR138 4.1 17.9 1.0
C A:THR137 4.2 20.8 1.0
O A:ARG169 4.2 22.6 1.0
O A:HOH852 4.2 34.2 1.0
CA A:TYR138 4.3 20.4 1.0
CG2 A:THR137 4.3 23.8 1.0
CG A:LYS141 4.4 28.3 1.0
CD1 A:TYR138 4.5 18.7 1.0
O A:GLU136 4.5 26.6 1.0
O A:LYS168 4.6 25.9 1.0
O A:VAL134 4.6 24.1 1.0
CD2 A:TYR138 4.7 18.7 1.0
CG A:ARG169 4.7 29.1 1.0
CB A:THR137 4.7 26.4 1.0
CD A:LYS141 4.7 35.6 1.0
N A:THR137 4.9 21.9 1.0
O A:TYR138 4.9 20.9 1.0
N A:ARG169 5.0 22.7 1.0
N A:GLY170 5.0 22.4 1.0

Bromine binding site 2 out of 6 in 9hh2

Go back to Bromine Binding Sites List in 9hh2
Bromine binding site 2 out of 6 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br603

b:25.7
occ:0.72
OH A:TYR189 3.2 23.4 1.0
O A:HOH907 3.3 33.2 1.0
N A:MET211 3.3 22.9 1.0
NE2 A:GLN190 3.4 31.4 1.0
N A:GLU220 3.5 25.6 1.0
CB A:GLU220 3.7 22.6 1.0
CE1 A:TYR189 3.8 23.9 1.0
CZ A:TYR189 4.0 21.3 1.0
CA A:PRO210 4.0 22.9 1.0
N A:ASN219 4.0 26.4 1.0
CB A:MET211 4.0 20.5 1.0
C A:PRO210 4.2 22.2 1.0
CA A:MET211 4.2 20.4 1.0
CA A:GLU220 4.2 22.8 1.0
CG A:MET211 4.3 23.3 1.0
CB A:ALA218 4.3 26.1 1.0
O A:MET211 4.4 24.6 1.0
CA A:ASN219 4.4 29.2 1.0
CB A:PRO210 4.4 26.9 1.0
C A:ASN219 4.4 29.6 1.0
CD A:GLN190 4.5 31.3 1.0
C A:MET211 4.6 25.2 1.0
CG A:GLN190 4.7 28.0 1.0
C A:ALA218 4.7 23.9 1.0
CE A:MET211 4.7 22.5 1.0
O A:GLU220 4.7 27.4 1.0
CA A:ALA218 4.9 25.6 1.0
N A:ALA218 4.9 26.0 1.0
C A:GLU220 5.0 24.3 1.0

Bromine binding site 3 out of 6 in 9hh2

Go back to Bromine Binding Sites List in 9hh2
Bromine binding site 3 out of 6 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br604

b:29.6
occ:0.62
N A:ASP305 3.4 20.1 1.0
O A:HOH711 3.4 40.9 1.0
C A:LYS302 3.5 25.0 1.0
N A:PHE304 3.5 21.0 1.0
CA A:LYS302 3.6 22.4 1.0
O A:LYS302 3.7 27.5 1.0
CG A:ASP305 3.9 38.1 1.0
O A:HOH984 3.9 27.3 1.0
CB A:PHE304 3.9 21.6 1.0
CB A:ASP305 3.9 26.1 1.0
OD2 A:ASP305 4.0 39.2 1.0
N A:GLN303 4.0 21.1 1.0
CA A:PHE304 4.1 20.0 1.0
C A:PHE304 4.2 22.4 1.0
CB A:LYS302 4.3 29.0 1.0
CA A:ASP305 4.3 23.3 1.0
OD1 A:ASP305 4.3 34.8 1.0
C A:GLN303 4.3 22.5 1.0
CA A:GLN303 4.6 19.8 1.0
O A:LEU298 4.7 21.4 1.0
N A:LYS302 4.7 22.6 1.0
O A:LYS299 4.9 24.3 1.0

Bromine binding site 4 out of 6 in 9hh2

Go back to Bromine Binding Sites List in 9hh2
Bromine binding site 4 out of 6 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br602

b:22.4
occ:0.75
NE B:ARG169 3.2 22.5 1.0
N B:TYR138 3.3 20.1 1.0
O B:HOH844 3.3 35.5 1.0
NZ B:LYS141 3.6 39.0 1.0
CE B:LYS141 3.7 36.5 1.0
NH2 B:ARG169 3.8 21.5 1.0
CA B:ARG169 3.8 20.5 1.0
CD B:LYS141 3.8 35.5 1.0
CA B:THR137 3.9 19.9 1.0
CZ B:ARG169 4.0 20.0 1.0
CB B:TYR138 4.0 18.4 1.0
CB B:LYS141 4.0 22.1 1.0
CD B:ARG169 4.1 26.6 1.0
CB B:ARG169 4.1 22.3 1.0
O B:HOH914 4.1 34.2 1.0
C B:ARG169 4.1 22.7 1.0
C B:THR137 4.1 20.1 1.0
CG B:TYR138 4.1 19.1 1.0
O B:ARG169 4.2 24.1 1.0
CG2 B:THR137 4.2 21.5 1.0
CA B:TYR138 4.2 19.1 1.0
CD1 B:TYR138 4.5 19.0 1.0
CG B:LYS141 4.6 26.4 1.0
O B:LYS168 4.6 28.2 1.0
O B:GLU136 4.6 25.5 1.0
O B:VAL134 4.6 27.8 1.0
CB B:THR137 4.7 23.2 1.0
CD2 B:TYR138 4.7 19.9 1.0
CG B:ARG169 4.7 26.8 1.0
O B:TYR138 4.9 19.6 1.0
N B:THR137 4.9 20.3 1.0
N B:GLY170 5.0 22.5 1.0

Bromine binding site 5 out of 6 in 9hh2

Go back to Bromine Binding Sites List in 9hh2
Bromine binding site 5 out of 6 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br603

b:25.7
occ:0.69
O B:HOH814 3.2 32.5 1.0
OH B:TYR189 3.2 24.9 1.0
N B:MET211 3.3 23.1 1.0
NE2 B:GLN190 3.5 33.4 1.0
N B:GLU220 3.5 23.7 1.0
CB B:GLU220 3.8 21.8 1.0
CE1 B:TYR189 3.8 25.6 1.0
CZ B:TYR189 4.0 24.1 1.0
CB B:MET211 4.0 21.4 1.0
N B:ASN219 4.0 27.6 1.0
CA B:PRO210 4.0 25.6 1.0
CA B:MET211 4.1 24.3 1.0
C B:PRO210 4.2 22.7 1.0
CA B:GLU220 4.2 24.6 1.0
CB B:ALA218 4.3 25.5 1.0
CG B:MET211 4.3 21.1 1.0
O B:MET211 4.3 25.9 1.0
CA B:ASN219 4.4 28.9 1.0
C B:ASN219 4.4 26.2 1.0
CB B:PRO210 4.4 28.3 1.0
CD B:GLN190 4.6 35.3 1.0
C B:MET211 4.6 26.9 1.0
CE B:MET211 4.6 21.8 1.0
C B:ALA218 4.7 28.9 1.0
O B:GLU220 4.7 26.9 1.0
CG B:GLN190 4.8 30.4 1.0
CA B:ALA218 4.9 25.3 1.0
N B:ALA218 4.9 26.6 1.0
C B:GLU220 5.0 24.7 1.0

Bromine binding site 6 out of 6 in 9hh2

Go back to Bromine Binding Sites List in 9hh2
Bromine binding site 6 out of 6 in the Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of the Family S1_19 Carrageenan Sulfatase Zgcgsa From Zobellia Galactanivorans in Complex with Hybrid A-I- Neocarratetraose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br604

b:30.4
occ:0.52
N B:ASP305 3.3 20.8 1.0
C B:LYS302 3.5 25.8 1.0
N B:PHE304 3.6 20.7 1.0
CA B:LYS302 3.6 26.4 1.0
O B:LYS302 3.6 27.4 1.0
CB B:ASP305 3.7 21.0 1.0
CB B:PHE304 3.8 20.6 1.0
CA B:PHE304 4.0 21.1 1.0
O B:HOH955 4.1 26.4 1.0
N B:GLN303 4.1 22.6 1.0
CA B:ASP305 4.1 21.6 1.0
C B:PHE304 4.2 21.2 1.0
C B:GLN303 4.3 20.9 1.0
CB B:LYS302 4.3 31.2 1.0
O B:HOH1103 4.5 39.9 1.0
O B:LEU298 4.6 21.7 1.0
N B:LYS302 4.7 23.4 1.0
CA B:GLN303 4.7 22.5 1.0
O B:LYS299 4.8 27.6 1.0
CG B:LYS302 4.9 34.3 1.0
CA B:LYS299 5.0 24.7 1.0

Reference:

A.Chevenier, M.Fanuel, E.Sokolova, D.Mico Latorre, D.Jouanneau, A.Jeudy, A.Prechoux, M.K.Zuhlke, J.Bartel, D.Becher, M.Czjzek, D.Ropartz, G.Michel, E.Ficko-Blean. Structure, Function and Catalytic Mechanism of the Carrageenan-Sulfatases From the Marine Bacterium Zobellia Galactanivorans Dsij T. Carbohydr Polym V. 358 23487 2025.
ISSN: ESSN 1879-1344
PubMed: 40383559
DOI: 10.1016/J.CARBPOL.2025.123487
Page generated: Mon Jul 7 12:59:30 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy