Bromine in PDB 9uwz: Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus

The structure of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus, PDB code: 9uwz was solved by M.Iimori, H.Oki, Y.Akeda, E.Ishii, T.Kodama, T.Ueda, S.Nakamura, S.Matsuda, K.Kawahara, T.Iida, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.81 / 2.20
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	73.754, 73.754, 109.906, 90, 90, 90
R / Rfree (%)	23.9 / 29.5

The structure of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus also contains other interesting chemical elements:

Tantalum

(Ta)

6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Bromine atom in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus (pdb code 9uwz). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 12 binding sites of Bromine where determined in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus, PDB code: 9uwz:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Bromine binding site 1 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:47.5 occ:0.30 BR1 B:TBR202 0.0 47.5 0.3 TA2 B:TBR202 2.6 61.4 0.3 TA1 B:TBR202 2.6 59.0 0.3 BR5 B:TBR202 3.6 57.6 0.3 BR2 B:TBR202 3.6 48.6 0.3 BRC B:TBR202 3.6 52.1 0.3 BR4 B:TBR202 3.7 45.7 0.3 TA3 B:TBR202 4.1 64.1 0.3 TA6 B:TBR202 4.2 51.1 0.3

Bromine binding site 2 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:48.6 occ:0.30 BR2 B:TBR202 0.0 48.6 0.3 TA1 B:TBR202 2.6 59.0 0.3 TA3 B:TBR202 2.7 64.1 0.3 CD B:ARG66 3.5 61.4 1.0 BR6 B:TBR202 3.6 50.3 0.3 BR1 B:TBR202 3.6 47.5 0.3 BR3 B:TBR202 3.6 50.0 0.3 BR5 B:TBR202 3.7 57.6 0.3 CG B:ARG66 4.0 60.5 1.0 TA2 B:TBR202 4.2 61.4 0.3 TA5 B:TBR202 4.2 57.7 0.3 NE B:ARG66 4.7 67.2 1.0

Bromine binding site 3 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:50.0 occ:0.30 BR3 B:TBR202 0.0 50.0 0.3 TA1 B:TBR202 2.6 59.0 0.3 TA5 B:TBR202 2.6 57.7 0.3 CG B:ARG66 3.3 60.5 1.0 CA B:ARG66 3.5 48.9 1.0 BR6 B:TBR202 3.5 50.3 0.3 BR4 B:TBR202 3.5 45.7 0.3 CB B:ARG66 3.6 55.1 1.0 BR2 B:TBR202 3.6 48.6 0.3 BRB B:TBR202 3.7 41.3 0.3 CB B:GLU69 3.8 42.3 1.0 O B:ARG66 3.8 48.6 1.0 CD B:ARG66 3.9 61.4 1.0 CG B:GLU69 4.1 47.0 1.0 C B:ARG66 4.1 49.8 1.0 TA6 B:TBR202 4.1 51.1 0.3 TA3 B:TBR202 4.2 64.1 0.3 N B:ARG66 4.6 45.7 1.0 O B:VAL65 4.8 46.5 1.0 CD B:GLU69 5.0 52.9 1.0

Bromine binding site 4 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:45.7 occ:0.30 BR4 B:TBR202 0.0 45.7 0.3 TA6 B:TBR202 2.6 51.1 0.3 TA1 B:TBR202 2.6 59.0 0.3 BR3 B:TBR202 3.5 50.0 0.3 BRC B:TBR202 3.6 52.1 0.3 NH2 B:ARG73 3.6 55.9 1.0 BR1 B:TBR202 3.7 47.5 0.3 BRB B:TBR202 3.7 41.3 0.3 OE1 B:GLU69 3.9 50.0 1.0 CZ B:ARG73 4.0 64.4 1.0 CD B:GLU69 4.0 52.9 1.0 NH1 B:ARG73 4.1 58.3 1.0 TA5 B:TBR202 4.1 57.7 0.3 CB B:GLU69 4.1 42.3 1.0 TA2 B:TBR202 4.2 61.4 0.3 CG B:GLU69 4.3 47.0 1.0 OE2 B:GLU69 4.5 50.7 1.0 NE B:ARG73 4.7 64.6 1.0

Bromine binding site 5 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:57.6 occ:0.30 BR5 B:TBR202 0.0 57.6 0.3 TA2 B:TBR202 2.6 61.4 0.3 TA3 B:TBR202 2.6 64.1 0.3 BRA B:TBR202 3.5 57.7 0.3 BR1 B:TBR202 3.6 47.5 0.3 BR9 B:TBR202 3.6 56.2 0.3 BR2 B:TBR202 3.7 48.6 0.3 TA1 B:TBR202 4.2 59.0 0.3 TA4 B:TBR202 4.2 55.9 0.3

Bromine binding site 6 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:50.3 occ:0.30 BR6 B:TBR202 0.0 50.3 0.3 TA3 B:TBR202 2.6 64.1 0.3 TA5 B:TBR202 2.6 57.7 0.3 CD2 B:LEU132 3.4 50.5 1.0 CD B:ARG66 3.5 61.4 1.0 BR3 B:TBR202 3.5 50.0 0.3 BR2 B:TBR202 3.6 48.6 0.3 BR7 B:TBR202 3.7 46.6 0.3 BRA B:TBR202 3.8 57.7 0.3 NH1 B:ARG66 3.9 57.6 1.0 TA1 B:TBR202 4.1 59.0 0.3 CG B:ARG66 4.1 60.5 1.0 TA4 B:TBR202 4.2 55.9 0.3 CB B:ARG66 4.3 55.1 1.0 NE B:ARG66 4.5 67.2 1.0 CZ B:ARG66 4.7 70.0 1.0 CG B:LEU132 4.8 51.7 1.0

Bromine binding site 7 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:46.6 occ:0.30 BR7 B:TBR202 0.0 46.6 0.3 TA5 B:TBR202 2.6 57.7 0.3 TA4 B:TBR202 2.6 55.9 0.3 BRB B:TBR202 3.6 41.3 0.3 BR6 B:TBR202 3.7 50.3 0.3 BR8 B:TBR202 3.7 50.5 0.3 BRA B:TBR202 3.8 57.7 0.3 CD1 B:LEU70 3.8 48.6 1.0 TA3 B:TBR202 4.2 64.1 0.3 TA6 B:TBR202 4.2 51.1 0.3 CD2 B:LEU132 4.3 50.5 1.0 CG B:LEU70 4.8 49.4 1.0

Bromine binding site 8 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 8 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:50.5 occ:0.30 BR8 B:TBR202 0.0 50.5 0.3 TA4 B:TBR202 2.6 55.9 0.3 TA6 B:TBR202 2.6 51.1 0.3 BRB B:TBR202 3.5 41.3 0.3 BR9 B:TBR202 3.6 56.2 0.3 BR7 B:TBR202 3.7 46.6 0.3 BRC B:TBR202 3.7 52.1 0.3 TA2 B:TBR202 4.2 61.4 0.3 TA5 B:TBR202 4.2 57.7 0.3 CD B:ARG73 4.8 65.5 1.0 NE B:ARG73 4.9 64.6 1.0

Bromine binding site 9 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 9 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:56.2 occ:0.30 BR9 B:TBR202 0.0 56.2 0.3 TA2 B:TBR202 2.6 61.4 0.3 TA4 B:TBR202 2.6 55.9 0.3 BRA B:TBR202 3.5 57.7 0.3 BR8 B:TBR202 3.6 50.5 0.3 BR5 B:TBR202 3.6 57.6 0.3 BRC B:TBR202 3.7 52.1 0.3 TA6 B:TBR202 4.1 51.1 0.3 TA3 B:TBR202 4.2 64.1 0.3

Bromine binding site 10 out of 12 in the Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 10 of Crystal Structure of the Type III Secretion Chaperone Veca From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Br202 b:57.7 occ:0.30 BRA B:TBR202 0.0 57.7 0.3 TA3 B:TBR202 2.6 64.1 0.3 TA4 B:TBR202 2.6 55.9 0.3 BR5 B:TBR202 3.5 57.6 0.3 BR9 B:TBR202 3.5 56.2 0.3 BR7 B:TBR202 3.8 46.6 0.3 BR6 B:TBR202 3.8 50.3 0.3 TA2 B:TBR202 4.1 61.4 0.3 TA5 B:TBR202 4.3 57.7 0.3

M.Iimori, H.Oki, Y.Akeda, E.Ishii, T.Kodama, T.Ueda, S.Nakamura, S.Matsuda, K.Kawahara, T.Iida. Structural Basis of Effector Recognition By the T3SS Chaperone Veca From Vibrio Parahaemolyticus Biochem.Biophys.Res.Commun. V. 776 52190 2025.
ISSN: ESSN 1090-2104
DOI: 10.1016/J.BBRC.2025.152190