Atomistry » Bromine » PDB 3x41-4alu » 3zrg
Atomistry »
  Bromine »
    PDB 3x41-4alu »
      3zrg »

Bromine in PDB 3zrg: Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans

Protein crystallography data

The structure of Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans, PDB code: 3zrg was solved by S.R.F.King, L.S.Boutemy, J.Win, R.K.Hughes, T.A.Clarke, T.M.A.Blumenschein, S.Kamoun, M.J.Banfield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.70 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.450, 52.920, 53.730, 90.00, 90.00, 90.00
R / Rfree (%) 18.937 / 24.55

Bromine Binding Sites:

The binding sites of Bromine atom in the Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans (pdb code 3zrg). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 7 binding sites of Bromine where determined in the Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans, PDB code: 3zrg:
Jump to Bromine binding site number: 1; 2; 3; 4; 5; 6; 7;

Bromine binding site 1 out of 7 in 3zrg

Go back to Bromine Binding Sites List in 3zrg
Bromine binding site 1 out of 7 in the Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1121

b:17.5
occ:0.50
 N A:ALA57 3.3 29.5 1.0
NH2 A:ARG110 3.4 20.6 0.5
CB A:ALA57 3.6 28.6 1.0
N A:LEU58 3.6 25.5 1.0
O A:HOH2063 3.6 42.2 1.0
CA A:GLY55 3.7 29.9 1.0
C A:GLY55 3.7 29.9 1.0
CA A:ALA57 3.8 28.8 1.0
CD A:PRO56 3.9 32.4 1.0
N A:PRO56 3.9 30.9 1.0
C A:ALA57 4.0 27.1 1.0
O A:GLY55 4.2 29.2 1.0
CD1 A:LEU103 4.3 21.7 1.0
CE A:LYS107 4.3 22.7 1.0
C A:PRO56 4.4 30.8 1.0
CG A:LYS107 4.4 18.0 1.0
CB A:LEU58 4.5 22.2 1.0
CZ A:ARG110 4.6 22.8 0.5
CA A:LEU58 4.6 23.3 1.0
N A:GLY55 4.7 28.9 1.0
CA A:PRO56 4.7 32.2 1.0
O A:LEU58 4.8 24.5 1.0
CG A:PRO56 4.9 33.2 1.0
CD A:LYS107 4.9 18.5 1.0
NH1 A:ARG110 5.0 27.8 0.5

Bromine binding site 2 out of 7 in 3zrg

Go back to Bromine Binding Sites List in 3zrg
Bromine binding site 2 out of 7 in the Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1122

b:35.2
occ:1.00
 O A:HOH2046 3.1 26.6 1.0
CD A:LYS85 3.9 24.6 1.0
CA A:LEU99 3.9 14.0 1.0
CE A:LYS85 4.0 28.5 1.0
CG2 A:THR102 4.0 16.4 1.0
N A:LEU99 4.1 14.7 1.0
C A:LYS98 4.3 16.2 1.0
CD1 A:LEU99 4.3 14.0 1.0
CB A:LEU99 4.3 14.2 1.0
CG A:LYS85 4.4 20.6 1.0
O A:LYS98 4.4 16.8 1.0
NZ A:LYS85 4.5 30.2 1.0
O A:HOH2032 4.7 27.7 1.0
CB A:LYS98 4.8 18.2 1.0
CB A:LYS85 4.8 16.8 1.0
CG A:LEU99 4.9 13.6 1.0

Bromine binding site 3 out of 7 in 3zrg

Go back to Bromine Binding Sites List in 3zrg
Bromine binding site 3 out of 7 in the Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 3 of Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1123

b:18.7
occ:0.50
 NZ A:LYS107 3.2 21.5 1.0
CG A:LYS104 3.9 16.5 1.0
CE A:LYS107 4.0 22.7 1.0
CD2 A:LEU103 4.1 22.7 1.0
CE A:LYS104 4.3 26.1 1.0
CG A:LEU103 4.4 19.8 1.0
CD A:LYS107 4.6 18.5 1.0
CD A:LYS104 4.7 21.0 1.0
O A:HOH2055 4.9 19.1 1.0
N A:LYS104 5.0 15.2 1.0
CB A:LEU103 5.0 19.6 1.0
CA A:LYS104 5.0 14.4 1.0

Bromine binding site 4 out of 7 in 3zrg

Go back to Bromine Binding Sites List in 3zrg
Bromine binding site 4 out of 7 in the Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 4 of Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br1124

b:23.2
occ:0.50
 OH A:TYR76 3.1 15.4 1.0
NZ A:LYS107 3.2 21.5 1.0
CD A:LYS107 3.9 18.5 1.0
CE1 A:TYR76 4.0 10.8 1.0
CZ A:TYR76 4.1 11.8 1.0
CE A:LYS107 4.1 22.7 1.0
CD2 A:LEU80 4.2 20.2 1.0
O A:ALA57 4.3 29.0 1.0
CD1 A:LEU58 4.9 22.6 1.0

Bromine binding site 5 out of 7 in 3zrg

Go back to Bromine Binding Sites List in 3zrg
Bromine binding site 5 out of 7 in the Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 5 of Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br1120

b:16.5
occ:0.50
 NE B:ARG110 3.2 25.0 1.0
O B:HOH2006 3.4 30.0 1.0
N B:LEU58 3.5 23.7 1.0
CG B:LYS107 3.5 18.1 1.0
NH2 B:ARG110 3.6 31.3 1.0
CZ B:ARG110 3.9 28.0 1.0
CA B:LYS107 3.9 14.8 1.0
N B:LYS107 4.1 14.2 1.0
CB B:LEU58 4.1 20.5 1.0
CD B:ARG110 4.2 23.9 1.0
CB B:ALA57 4.2 27.9 1.0
CD1 B:LEU103 4.2 24.3 1.0
CA B:ALA57 4.2 26.7 1.0
CB B:LYS107 4.3 15.5 1.0
C B:LYS106 4.3 14.7 1.0
CA B:LEU58 4.3 22.5 1.0
C B:ALA57 4.3 25.6 1.0
O B:LYS106 4.4 14.5 1.0
CB B:LYS106 4.6 16.6 0.5
O B:LEU58 4.7 24.7 1.0
CB B:LYS106 4.7 16.3 0.5
O B:HOH2005 4.7 45.2 1.0
CB B:ARG110 4.7 15.3 1.0
CD B:LYS107 4.8 23.3 1.0
CG B:LEU58 4.8 22.6 1.0
C B:LEU58 4.9 22.8 1.0

Bromine binding site 6 out of 7 in 3zrg

Go back to Bromine Binding Sites List in 3zrg
Bromine binding site 6 out of 7 in the Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 6 of Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br1121

b:33.3
occ:0.50
 O B:HOH2040 3.4 25.4 1.0
CG2 B:THR102 3.8 22.1 1.0
CA B:LEU99 3.8 19.3 1.0
CD1 B:LEU99 4.1 22.9 1.0
N B:LEU99 4.1 20.2 1.0
CB B:LEU99 4.3 19.2 1.0
C B:LYS98 4.4 22.8 1.0
O B:LYS98 4.4 21.4 1.0
CD B:LYS85 4.5 29.1 1.0
O B:HOH2030 4.8 26.4 1.0
CB B:LYS98 4.8 26.8 1.0
NZ B:LYS85 4.8 36.4 1.0
CG B:LEU99 4.8 18.6 1.0
O B:HOH2042 5.0 30.2 1.0

Bromine binding site 7 out of 7 in 3zrg

Go back to Bromine Binding Sites List in 3zrg
Bromine binding site 7 out of 7 in the Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 7 of Crystal Structure of Rxlr Effector PEXRD2 From Phytophthora Infestans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br1122

b:27.8
occ:0.50
 O A:HOH2028 2.9 20.3 1.0
CG2 B:THR72 3.7 16.4 1.0
CG2 A:THR72 4.2 12.7 1.0
O B:HOH2016 4.4 26.2 1.0
O A:HOH2022 4.8 24.9 1.0
CB B:THR72 4.9 15.1 1.0

Reference:

L.S.Boutemy, S.R.F.King, J.Win, R.K.Hughes, T.A.Clarke, T.M.A.Blumenschein, S.Kamoun, M.J.Banfield. Structures of Phytophthora Rxlr Effector Proteins: A Conserved But Adaptable Fold Underpins Functional Diversity. J.Biol.Chem. V. 286 35834 2011.
ISSN: ISSN 0021-9258
PubMed: 21813644
DOI: 10.1074/JBC.M111.262303
Page generated: Wed Jul 10 20:42:44 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy