The binding sites of Bromine atom in the structure of Structure of Sarcin/Ricin Loop From Rat 28S Rrna (pdb code 430d). This binding sites where shown with 5.0 Angstroms radius around Bromine atom.
The 430d structure was solved by C.C.CORRELL, A.MUNISHKIN, Y-L.CHAN, Z.REN, I.G.WOOL, T.A.STEITZ, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 30.0-2.1 | | Space group | P6122 | | a (A) | 56.830 | | b (A) | 56.830 | | c (A) | 107.960 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 120.00 | | Rfactor (%) | 28 | | Rfree (%) | 33 |
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Bromine binding site 1 out of 1 in 430d
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Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Bromine in the PDB 430d. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Bromine atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: A26, A: Cbv27, A: C28, A: Mg34, | conact list:
| Atom | Atom | Distance (A) | | Br | N9 A:A26 | 3.98 | | Br | N3 A:A26 | 4.76 | | Br | C3' A:A26 | 4.11 | | Br | C8 A:A26 | 3.89 | | Br | C6 A:A26 | 4.78 | | Br | C5 A:A26 | 4.09 | | Br | C1' A:A26 | 4.62 | | Br | N7 A:A26 | 3.99 | | Br | O3' A:A26 | 4.83 | | Br | C4 A:A26 | 4.10 | | Br | C2' A:A26 | 4.11 | | Br | O5' A:A26 | 4.74 | | Br | N3 A:Cbv27 | 4.31 | | Br | C2 A:Cbv27 | 4.67 | | Br | C6 A:Cbv27 | 2.80 | | Br | N1 A:Cbv27 | 4.06 | | Br | C5 A:Cbv27 | 2.10 | | Br | P A:Cbv27 | 4.49 | | Br | C4 A:Cbv27 | 3.15 | | Br | BR A:Cbv27 | 0.00 | | Br | O5' A:Cbv27 | 4.24 | | Br | N4 A:Cbv27 | 3.48 | | Br | O2P A:Cbv27 | 3.60 | | Br | C5 A:C28 | 4.46 | | Br | C4 A:C28 | 4.98 | | Br | N4 A:C28 | 4.73 | | Br | MG A:Mg34 | 4.15 |
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