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Bromine in PDB 430d: Structure of Sarcin/Ricin Loop From Rat 28S Rrna

Protein crystallography data

The structure of Structure of Sarcin/Ricin Loop From Rat 28S Rrna, PDB code: 430d was solved by C.C.Correll, A.Munishkin, Y.L.Chan, Z.Ren, I.G.Wool, T.A.Steitz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.10
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 56.830, 56.830, 107.960, 90.00, 90.00, 120.00
R / Rfree (%) 28 / 33

Other elements in 430d:

The structure of Structure of Sarcin/Ricin Loop From Rat 28S Rrna also contains other interesting chemical elements:

Magnesium (Mg) 9 atoms

Bromine Binding Sites:

The binding sites of Bromine atom in the Structure of Sarcin/Ricin Loop From Rat 28S Rrna (pdb code 430d). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Structure of Sarcin/Ricin Loop From Rat 28S Rrna, PDB code: 430d:

Bromine binding site 1 out of 1 in 430d

Go back to Bromine Binding Sites List in 430d
Bromine binding site 1 out of 1 in the Structure of Sarcin/Ricin Loop From Rat 28S Rrna


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of Sarcin/Ricin Loop From Rat 28S Rrna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br27

b:92.7
occ:1.00
BR A:CBV27 0.0 92.7 1.0
C5 A:CBV27 2.1 53.2 1.0
C6 A:CBV27 2.8 54.3 1.0
C4 A:CBV27 3.2 52.8 1.0
N4 A:CBV27 3.5 51.9 1.0
O2P A:CBV27 3.6 57.9 1.0
C8 A:A26 3.9 56.1 1.0
N9 A:A26 4.0 57.2 1.0
N7 A:A26 4.0 55.7 1.0
N1 A:CBV27 4.1 54.5 1.0
C5 A:A26 4.1 55.5 1.0
C4 A:A26 4.1 56.4 1.0
C2' A:A26 4.1 58.7 1.0
C3' A:A26 4.1 58.7 1.0
MG A:MG34 4.2 71.5 1.0
O5' A:CBV27 4.2 58.0 1.0
N3 A:CBV27 4.3 52.8 1.0
C5 A:C28 4.5 52.1 1.0
P A:CBV27 4.5 58.3 1.0
C1' A:A26 4.6 58.4 1.0
C2 A:CBV27 4.7 53.4 1.0
N4 A:C28 4.7 52.0 1.0
O5' A:A26 4.7 61.5 1.0
N3 A:A26 4.8 56.5 1.0
C6 A:A26 4.8 54.4 1.0
O3' A:A26 4.8 58.4 1.0
C4 A:C28 5.0 51.9 1.0

Reference:

C.C.Correll, A.Munishkin, Y.L.Chan, Z.Ren, I.G.Wool, T.A.Steitz. Crystal Structure of the Ribosomal Rna Domain Essential For Binding Elongation Factors. Proc.Natl.Acad.Sci.Usa V. 95 13436 1998.
ISSN: ISSN 0027-8424
PubMed: 9811818
DOI: 10.1073/PNAS.95.23.13436
Page generated: Sat Dec 12 02:17:08 2020

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