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Bromine in PDB 4yd4: Endothiapepsin in Complex with Fragment 227

Enzymatic activity of Endothiapepsin in Complex with Fragment 227

All present enzymatic activity of Endothiapepsin in Complex with Fragment 227:
3.4.23.22;

Protein crystallography data

The structure of Endothiapepsin in Complex with Fragment 227, PDB code: 4yd4 was solved by M.Stieler, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.60 / 1.27
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.342, 73.490, 53.026, 90.00, 109.56, 90.00
R / Rfree (%) 12.2 / 14.7

Bromine Binding Sites:

The binding sites of Bromine atom in the Endothiapepsin in Complex with Fragment 227 (pdb code 4yd4). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total only one binding site of Bromine was determined in the Endothiapepsin in Complex with Fragment 227, PDB code: 4yd4:

Bromine binding site 1 out of 1 in 4yd4

Go back to Bromine Binding Sites List in 4yd4
Bromine binding site 1 out of 1 in the Endothiapepsin in Complex with Fragment 227


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Endothiapepsin in Complex with Fragment 227 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br406

b:17.6
occ:0.41
H A:TYR185 2.3 10.9 1.0
O A:HOH1951 2.5 38.7 1.0
HB2 A:TYR185 3.1 11.8 1.0
HA A:THR184 3.1 11.4 1.0
N A:TYR185 3.2 9.1 1.0
HD2 A:TYR185 3.2 11.6 1.0
HG23 A:THR184 3.7 13.1 1.0
CB A:TYR185 3.9 9.8 1.0
CA A:THR184 4.0 9.5 1.0
CA A:TYR185 4.0 9.6 1.0
O A:TYR185 4.0 11.9 1.0
CD2 A:TYR185 4.1 9.7 1.0
C A:THR184 4.1 9.0 1.0
O A:ILE183 4.1 10.0 1.0
CG2 A:THR184 4.5 10.9 1.0
C A:TYR185 4.5 9.8 1.0
CG A:TYR185 4.5 9.5 1.0
HG22 A:THR184 4.5 13.1 1.0
HB3 A:TYR185 4.7 11.8 1.0
CB A:THR184 4.8 10.6 1.0
HA A:TYR185 4.9 11.5 1.0
C A:ILE183 5.0 9.3 1.0
O A:HOH1463 5.0 33.9 1.0
N A:THR184 5.0 9.2 1.0

Reference:

M.Stieler, A.Heine, G.Klebe. Crystallographic Fragment Screening of An Entire Library To Be Published.
Page generated: Sat Dec 12 02:24:09 2020

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