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Bromine in PDB 3bbz: Structure of the Nucleocapsid-Binding Domain From the Mumps Virus Phosphoprotein

Protein crystallography data

The structure of Structure of the Nucleocapsid-Binding Domain From the Mumps Virus Phosphoprotein, PDB code: 3bbz was solved by R.L.Kingston, L.S.Gay, W.S.Baase, B.W.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.74 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 23.992, 55.485, 60.019, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 24.1

Bromine Binding Sites:

The binding sites of Bromine atom in the Structure of the Nucleocapsid-Binding Domain From the Mumps Virus Phosphoprotein (pdb code 3bbz). This binding sites where shown within 5.0 Angstroms radius around Bromine atom.
In total 2 binding sites of Bromine where determined in the Structure of the Nucleocapsid-Binding Domain From the Mumps Virus Phosphoprotein, PDB code: 3bbz:
Jump to Bromine binding site number: 1; 2;

Bromine binding site 1 out of 2 in 3bbz

Go back to Bromine Binding Sites List in 3bbz
Bromine binding site 1 out of 2 in the Structure of the Nucleocapsid-Binding Domain From the Mumps Virus Phosphoprotein


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 1 of Structure of the Nucleocapsid-Binding Domain From the Mumps Virus Phosphoprotein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Br65

b:17.6
occ:0.50
CA A:ALA365 3.8 3.3 1.0
N A:ALA365 3.9 3.8 1.0
CB A:ALA365 4.1 3.2 1.0
C A:GLN364 4.2 5.4 1.0
CG A:GLN368 4.2 7.3 1.0
O A:GLN364 4.2 3.9 1.0
CB A:GLN364 4.4 7.1 1.0
CB A:GLN368 4.8 2.8 1.0
OE1 A:GLN364 4.8 20.6 1.0
NE2 A:GLN368 4.9 6.4 1.0
CD A:GLN368 4.9 9.0 1.0

Bromine binding site 2 out of 2 in 3bbz

Go back to Bromine Binding Sites List in 3bbz
Bromine binding site 2 out of 2 in the Structure of the Nucleocapsid-Binding Domain From the Mumps Virus Phosphoprotein


Mono view


Stereo pair view

A full contact list of Bromine with other atoms in the Br binding site number 2 of Structure of the Nucleocapsid-Binding Domain From the Mumps Virus Phosphoprotein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Br64

b:16.2
occ:0.50
O B:HOH418 2.9 2.1 0.5
CA B:ALA365 3.6 2.2 1.0
N B:ALA365 3.8 3.5 1.0
CB B:ALA365 4.0 2.0 1.0
C B:GLN364 4.1 5.3 1.0
O B:GLN364 4.2 4.2 1.0
CG B:GLN368 4.3 4.9 1.0
CB B:GLN364 4.4 6.5 1.0
OE1 B:GLN364 4.8 16.3 1.0
CB B:GLN368 4.8 4.6 1.0
O B:GLN361 4.9 4.1 1.0
CA B:GLN364 5.0 7.5 1.0
C B:ALA365 5.0 2.1 1.0

Reference:

R.L.Kingston, L.S.Gay, W.S.Baase, B.W.Matthews. Structure of the Nucleocapsid-Binding Domain From the Mumps Virus Polymerase; An Example of Protein Folding Induced By Crystallization J.Mol.Biol. V. 379 719 2008.
ISSN: ISSN 0022-2836
PubMed: 18468621
DOI: 10.1016/J.JMB.2007.12.080
Page generated: Wed Jul 10 19:08:16 2024

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